Locus 6906

Sequence ID 3R_DroMel_CAF1
Location 18,241,264 – 18,241,384
Length 120
Max. P 0.816463
window11211

overview

Window 1

Location 18,241,264 – 18,241,384
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 73.17
Mean single sequence MFE -44.92
Consensus MFE -19.35
Energy contribution -18.52
Covariance contribution -0.83
Combinations/Pair 1.58
Mean z-score -2.01
Structure conservation index 0.43
SVM decision value 0.67
SVM RNA-class probability 0.816463
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18241264 120 - 27905053
AAAAGAACCUGCAGUUGAGCAGGAGCUACGGCGUUAAGAUAACUGGCCAAUGUUAUAAGCUGCUUAUUAUCCACGGGUGUGCGUUGAAGAGGCAACUUCUGGAGCAGGCAAUGCUUCCAA
.......(((((...(((((((..((....))......(((((........)))))...)))))))...((((..(((.(((.((...)).))))))..)))))))))............ ( -35.50)
>DroPse_CAF1 15084 120 - 1
AAGAGCACCUGCAGCUGGGCGGGAGCCACGACAUGCAGGUAGGACACCAGUGGGAAGAGCUGUUUGUUUUCGCUGGGCGUCCGCUGGAGGGGCAGCUUCUGCAGCAGGCAGUGCCUCCAG
...((((((((((..(((((....))).))...))))))).((((.((((((..((.((....)).))..))))))..)))))))(((((.((.(((((....).)))).)).))))).. ( -58.90)
>DroGri_CAF1 45536 120 - 1
AAGAGCAACUGCAGCUGUGUGGGCGCAACGACAUUUAGAUAACCCACAAGCGAGCAAAGUGCUCCAUUUUCGAUGGGCGUACGCUGCAGCGGCAGCUUCUGCAGCAAACAAUGCUGCCAA
..((((..((((.(((.((((((...................)))))))))..(((..((((((((((...)))))).))))..))).))))..))))..((((((.....))))))... ( -43.41)
>DroEre_CAF1 9472 120 - 1
AAAAGAACUUGCAGUUGAGCAGGAGCUACGGCGUUAAGAUAAGUGGCCAAUGUUUUAAGCUGCUUAUUAUCCACGGGUGUGCGUUGGAGUGGCAACUUCUGAAGCAGGCAAUGCUUCCAA
...(((((((((......))))).(((((........((((((..((...........))..)))))).((((((......)).)))))))))...))))((((((.....))))))... ( -37.00)
>DroAna_CAF1 9432 120 - 1
AACAGCACCUGCAGCUGAGUUGGAGAAGUAGCAUUCAGAUACGUUGCUAAGGUUUUCAGCUGCUCAUUUUCCACUGGCGUGCGCUGAAGAGGUAGCUUUUGAAGCAAGCAGUGCUUCCAA
...(((((((.((((..(((((((((..(((((...........)))))...)))))))))((.((........))))....))))...)))).)))...((((((.....))))))... ( -35.80)
>DroPer_CAF1 15143 120 - 1
AAGAGCACCUGCAGCUGGGCGGGAGCCACGACAUGCAGGUAGGACACCAGUGGGAAGAGCUGUUUGUUUUCGCUGGGCGUCCGCUGGAGGGGCAGCUUCUGCAGCAGGCAGUGCCUCCAG
...((((((((((..(((((....))).))...))))))).((((.((((((..((.((....)).))..))))))..)))))))(((((.((.(((((....).)))).)).))))).. ( -58.90)
>consensus
AAGAGCACCUGCAGCUGAGCGGGAGCAACGACAUUCAGAUAAGUCACCAAUGUGAAAAGCUGCUUAUUUUCCACGGGCGUGCGCUGGAGAGGCAGCUUCUGCAGCAGGCAAUGCUUCCAA
....((.(((((......))))).)).....................((((((.....(((..............)))..))))))..((((((...((((...))))...))))))... (-19.35 = -18.52 +  -0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:33:00 2006