Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 18,240,080 – 18,240,170 |
Length | 90 |
Max. P | 0.651704 |
Location | 18,240,080 – 18,240,170 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 79.83 |
Mean single sequence MFE | -26.67 |
Consensus MFE | -18.36 |
Energy contribution | -17.67 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.16 |
Mean z-score | -1.35 |
Structure conservation index | 0.69 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.651704 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18240080 90 + 27905053 UAGUCACUUCAUGAUAUAUUUAGGUAUCGCUGCAUGAAGGUGCGCC-UUCCGAGCUUGACUAGAGCCGUU-AUCUCUACCUCGAGCUCCA-C-A ..((..(((((((..((((....)))).....)))))))..))...-....((((((((.(((((.....-..)))))..))))))))..-.-. ( -24.50) >DroPse_CAF1 13893 90 + 1 GAGUAUGUACGA-GAGUAUUUAGGAAACGUUGCAUGUCGGCGCGCCCCUUGGAGCUUGACUAGAGCCCAU-AUCUCUAGCUCGGGCUCCC-C-C ..(..(((.(((-.((((....(....)..))).).))))))..).....(((((((((((((((.....-..)))))).))))))))).-.-. ( -30.20) >DroEre_CAF1 8287 90 + 1 UAGUCACUUCAUGAUAAAUUUAGGAAUCGCUGCAUGAAGGUGCGCC-UUCCGAGCUUGACUAGAGCCGUU-AUCUCUACCUCGAGCUCCA-C-A ..((((.....)))).......((((..((.((((....)))))).-))))((((((((.(((((.....-..)))))..))))))))..-.-. ( -25.00) >DroYak_CAF1 8241 88 + 1 UAGUCACUUCAUGAU--AUUUAGGAAUCGCUGCAUGAAGGUGCGCC-UUCCGAGCUUGACUAGAGCCGUU-AUCUCUACCUCGAGCUCCA-C-A ..((((.....))))--.....((((..((.((((....)))))).-))))((((((((.(((((.....-..)))))..))))))))..-.-. ( -25.00) >DroAna_CAF1 8251 90 + 1 UAG--AGUUCG-GCUGUAUUUAGGAAUCGCUGCAUGAAGGCGCGCC-UCCCGAGCUUGACUAGAGCCACUAAUCUCUACCUCGAGCUCCCAUUU ...--.....(-(.........(((..(((.((......)))))..-))).((((((((.(((((........)))))..)))))))))).... ( -25.10) >DroPer_CAF1 13952 90 + 1 GAGUAUGUACGA-GAGUAUUUAGGAAACGUUGCAUGUCGGCGCGCCCCUUGGAGCUUGACUAGAGCCCAU-AUCUCUAGCUCGGGCUCCC-C-C ..(..(((.(((-.((((....(....)..))).).))))))..).....(((((((((((((((.....-..)))))).))))))))).-.-. ( -30.20) >consensus UAGUCACUUCAUGAUGUAUUUAGGAAUCGCUGCAUGAAGGCGCGCC_UUCCGAGCUUGACUAGAGCCGUU_AUCUCUACCUCGAGCUCCA_C_A ......................((...((((.......))))..)).....((((((((.(((((........)))))..))))))))...... (-18.36 = -17.67 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:59 2006