| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,234,619 – 18,234,712 |
| Length | 93 |
| Max. P | 0.805020 |
| Location | 18,234,619 – 18,234,712 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 78.67 |
| Mean single sequence MFE | -22.17 |
| Consensus MFE | -12.89 |
| Energy contribution | -12.86 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.805020 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18234619 93 + 27905053 ---UCAUUAUA----AUCAAGUUAAUUUAUAAAACGUGUAAUAACUUGCCUUAUUGCAUUCGGAUUUUCCUUGUCCAAAGGCAGGGGGUUUUUGUUAGCA ---........----.....((((((....((((((((((((((......)))))))))........((((((((....))))))))))))).)))))). ( -22.70) >DroSec_CAF1 2853 93 + 1 ---UCAUUAUA----AUCAAGUUGAUUGAUAAAACGAGCUAUAACUUGCCUUAUUGCAUUCGGAUUUUCUUUGUCCAACGGCAGGGGGUUUUUGUUAGCA ---........----(((((.....))))).......((((......(((((.((((....((((.......))))....)))))))))......)))). ( -20.50) >DroSim_CAF1 2861 93 + 1 ---UCAUUAUA----AUCAAGUUGAUUGAUAAAACGAGUUAUAACUUGCCUUAUUGCAUUCGGAUUUUCUUUGUCCAAAGGCAGGGGGUUUUUGUUAGCA ---........----(((((.....)))))..((((((..((..((((((((...(....)((((.......)))).))))))))..)).)))))).... ( -20.00) >DroEre_CAF1 2862 92 + 1 ---UCAAUAUA----AUCAAGAUUAUUGAUAUAAUUUGUU-UAACUUGCCUAAUUGCAUUCGGAAUUUCUUUAUCCAAAGGCAGGGGGUUUUUGUUAGCA ---((((((..----........))))))..((((..(..-(..(((((((..(((.((..((.....))..)).))))))))))..)..)..))))... ( -15.40) >DroYak_CAF1 2832 87 + 1 ---UUAAUAUU----UUCAAGAUUA------UAACUUGUAACAACUUGCCUAAUUGCAUUCGGAUUUUCCUUGUCCAAAGGCAGAGGGUUUUUGUUAGCA ---........----..((((....------...))))((((((...((((..((((....((((.......))))....)))).))))..))))))... ( -16.80) >DroPer_CAF1 8647 99 + 1 GAUUCAUUAAAUGCCAGUAAGAUCCCCUGUAAAUCUAGU-GUAUCUCACUUAAUUGCAUUUGGAUUCUCCUUGUCCAACGGCAGGGGAUUUCUAUUGGCA ...........(((((((((((((((((((.(((..(((-(.....))))..)))....((((((.......))))))..))))))))))).)))))))) ( -37.60) >consensus ___UCAUUAUA____AUCAAGAUGAUUGAUAAAACGAGUUAUAACUUGCCUAAUUGCAUUCGGAUUUUCCUUGUCCAAAGGCAGGGGGUUUUUGUUAGCA .................((((((...................))))))......(((...((((..(((((((((....)))))))))..))))...))) (-12.89 = -12.86 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:55 2006