Locus 6902

Sequence ID 3R_DroMel_CAF1
Location 18,234,162 – 18,234,254
Length 92
Max. P 0.658758
window11205

overview

Window 5

Location 18,234,162 – 18,234,254
Length 92
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 80.72
Mean single sequence MFE -29.62
Consensus MFE -20.55
Energy contribution -20.00
Covariance contribution -0.55
Combinations/Pair 1.20
Mean z-score -1.46
Structure conservation index 0.69
SVM decision value 0.26
SVM RNA-class probability 0.658758
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18234162 92 + 27905053
CCACCGAGUUCCAGGAAACGGGCCAAUGGUGGAAAGUGGGCAUGAACAAGCAACGUUCCAGUAAACUGGAUGCCGUCUAAACU--AUGUGGUUA------
((((((.(..((.(....)))..)..))))))......(((((((((.......))))(((....))).))))).....((((--....)))).------ ( -25.60)
>DroPse_CAF1 8077 96 + 1
CCAUCGAGUUCCAGGAGACGGGACAGUGGUGGAAGGUGGGCAUGAACCAGCAGCGCACCAGCAAUUUGGAUGCAGUCUAAAGGCAGCGU----AACGUUU
((((((.(((((.(....))))))..))))))..((((.((.((......)))).))))..........((((.(((....))).))))----....... ( -31.80)
>DroSim_CAF1 2404 92 + 1
CCACCGAGUUCCAGGAGACGGGCCAAUGGUGGAAAGUGGGCAUGAACAAGCAACGUUCCAGUAAACUGGAUGCCGUCUAAGCU--AUGUGGUUA------
((((..((((.....((((((.(((.((.(((((.((..((........)).)).))))).))...)))...)))))).))))--..))))...------ ( -28.50)
>DroEre_CAF1 2399 98 + 1
CCACCGAGUUCCAGGAGACGGGCCAAUGGUGGAAAGUUGGCAUGAACAAACAACGUUCCAGUAAACUGGAUGCCGUGUAAAAA--AUGUGGUAACCACUC
((((((.(..((.(....)))..)..))))))...((((...........))))..(((((....)))))(((((..(.....--)..)))))....... ( -28.60)
>DroYak_CAF1 2376 98 + 1
CCACCGAGUUCCAGGAGACGGGCCAAUGGUGGAAAGUUGGCAUGAACAAACAACGUUCCAGUAAACUGGAUGCCGUCUAAGAA--GUGUGGUAAACACUU
((((((.(..((.(....)))..)..))))))..((.((((((((((.......))))(((....))).)))))).))...((--((((.....)))))) ( -31.40)
>DroPer_CAF1 8142 96 + 1
CCAUCGAGUUCCAGGAGACGGGACAGUGGUGGAAGGUGGGCAUGAACCAGCAGCGCACCAGCAAUUUGGAUGCAGUCUAAAGGCAGCGU----AACGUUU
((((((.(((((.(....))))))..))))))..((((.((.((......)))).))))..........((((.(((....))).))))----....... ( -31.80)
>consensus
CCACCGAGUUCCAGGAGACGGGCCAAUGGUGGAAAGUGGGCAUGAACAAGCAACGUUCCAGUAAACUGGAUGCCGUCUAAAAA__AUGUGGU_AAC__UU
((((((....((.(....).))....))))))......(((((......((...)).((((....))))))))).......................... (-20.55 = -20.00 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:54 2006