Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,466,379 – 2,466,470 |
Length | 91 |
Max. P | 0.633526 |
Location | 2,466,379 – 2,466,470 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 90.11 |
Mean single sequence MFE | -23.70 |
Consensus MFE | -17.02 |
Energy contribution | -20.02 |
Covariance contribution | 3.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.90 |
Structure conservation index | 0.72 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633526 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2466379 91 - 27905053 UUUCCAUUGCAAUCAAUUCGAUUGUUUGUUUAAUAAAUCUGCUGCUCAAGUGUGGCGGCUGGACACUUGCAAAGGCAGUCGAAUACACAAU ...............((((((((((((((.........((((..(......)..))))..........))))..))))))))))....... ( -22.21) >DroSec_CAF1 25252 78 - 1 UUUCUAUUGCAAU-------------UGUUUAAUAAAUCUGCUGCUCAAGUGCGGCGGCGGGACACUUGCAAAGGCAGUCGAAUACACAAU .(((.(((((..(-------------(((........(((((((((.......)))))))))......))))..))))).)))........ ( -21.54) >DroSim_CAF1 22609 91 - 1 UUUCUAUUGCAAUCAAUUCGAUUGUUUGUUUAAUAAAUCUGCUGCUCAAGUGUGGCGGCGGGACACUUGCAAAGGCAGUCGAAUACACAAU ...............((((((((((((..........((((((((.((....))))))))))..........))))))))))))....... ( -25.45) >DroEre_CAF1 26707 91 - 1 UAUCUAUUGCAAUCAAUUCGAUUGUUUGUUUAAUAAAUCUGCUGCUCAAGUGUGGCGGCGGGACACUUGUAAAGGCAGUCGAAUACACAAU ...............((((((((((((...(((....((((((((.((....))))))))))....)))...))))))))))))....... ( -25.60) >consensus UUUCUAUUGCAAUCAAUUCGAUUGUUUGUUUAAUAAAUCUGCUGCUCAAGUGUGGCGGCGGGACACUUGCAAAGGCAGUCGAAUACACAAU ...............((((((((((((..........(((((((((.......)))))))))..........))))))))))))....... (-17.02 = -20.02 + 3.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:29 2006