| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 474,467 – 474,565 |
| Length | 98 |
| Max. P | 0.866267 |
| Location | 474,467 – 474,565 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 77.19 |
| Mean single sequence MFE | -22.33 |
| Consensus MFE | -15.42 |
| Energy contribution | -16.53 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.866267 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 474467 98 - 27905053 AUGUAUUUCUUGCGAUCAUUUAAGACCCUAACACC--UCGGAAGAAGCAUUGCUGUUAAUGUGCAGCUGUGAGGCCACUAUAAGGUUGUUACAAUUCGUU .((((((((((.(((....(((......)))....--))).))))))(((.(((((......))))).))).((((.......))))..))))....... ( -19.70) >DroSec_CAF1 2420 85 - 1 -----------UCGAUCAUUUACGAACCUCAUACU--UCGG-AGAAGUAUUGCUUUUAA-GAGCAGUUGUGAGGUCACUAUAUGGUUGUUAUAAUUAGAU -----------.(((((((......((((((((((--((..-.)))))(((((((....-))))))).)))))))......)))))))............ ( -23.40) >DroSim_CAF1 2417 87 - 1 -----------UCGAUCAUUUACGAACCUUACACUUUUCGG-AGAAGUAAUGCUUUUAA-GAGCAGUUGUGAGGUCACUAUGUGGUUGUUAUAAUUCGAU -----------.(((((((......((((((((((.(((..-(((((.....)))))..-))).)).))))))))......)))))))............ ( -23.90) >consensus ___________UCGAUCAUUUACGAACCUAACACU__UCGG_AGAAGUAUUGCUUUUAA_GAGCAGUUGUGAGGUCACUAUAUGGUUGUUAUAAUUCGAU ............(((((((......((((((((....((....)).....(((((.....)))))..))))))))......)))))))............ (-15.42 = -16.53 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:11 2006