Locus 6899

Sequence ID 3R_DroMel_CAF1
Location 18,225,804 – 18,225,896
Length 92
Max. P 0.602945
window11201

overview

Window 1

Location 18,225,804 – 18,225,896
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 80.95
Mean single sequence MFE -20.98
Consensus MFE -15.00
Energy contribution -16.17
Covariance contribution 1.17
Combinations/Pair 1.20
Mean z-score -1.32
Structure conservation index 0.71
SVM decision value 0.14
SVM RNA-class probability 0.602945
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18225804 92 + 27905053
CCCUCCCCAACAACUUCAGUUCACUUCACGGCGUGCUGGCGAAUGCUUAAAAAUUCAGUAGCCAAACACGCAAGCGCCAGCAGUCGCAGCCA
............................((((.((((((((..(((.......................)))..))))))))))))...... ( -23.20)
>DroSec_CAF1 28072 91 + 1
-UCUCCCCGUCAACUUCACUUCACUUCACGGCGUGCUGGCGAAUGCUUAAAAAUUCAGUAGCCAAACACGCAAGCGCCAGCAGUCGCAGCCA
-...........................((((.((((((((..(((.......................)))..))))))))))))...... ( -23.20)
>DroSim_CAF1 29199 91 + 1
-UCUCCCCGUCAACUUCACUUCACUUCACGGCGUGCUGGCGAAUGCUUAAAAAUUCAGUAGCCAAACACGCAAGCGCCAGCAGUCGCAGCCA
-...........................((((.((((((((..(((.......................)))..))))))))))))...... ( -23.20)
>DroEre_CAF1 27985 86 + 1
-UCUCACCAUCAACUUC-----ACUUCACGGCGUGCUGGGAAAUGCUUAAAAAUUCAGUAGCCAAACACGCAAGCGCCAGCAGUCGCAGUCC
-................-----......((((.((((((.....(((............)))....(.(....).)))))))))))...... ( -16.80)
>DroYak_CAF1 23476 86 + 1
-UCUCACCAUCAACUUC-----ACUUCACGGCGUGCUGGCAAAUGCUUAAAAAUUCAGUAGCCAAACACGCAAGCGCCGGCAGUCGCAGUGC
-...............(-----(((...((((.(((((((....(((............)))......(....).))))))))))).)))). ( -22.20)
>DroAna_CAF1 31735 77 + 1
----CCCCUUCCACCUGCCCCAAACAGACGGCGUGUUGGCGAAUGCUUAAAAAUUCAGUAGCCAAACACGCGAACAUCGCC-----------
----..........(((.......)))...((((((((((((((........))))....))).)))))))..........----------- ( -17.30)
>consensus
_UCUCCCCAUCAACUUCACUUCACUUCACGGCGUGCUGGCGAAUGCUUAAAAAUUCAGUAGCCAAACACGCAAGCGCCAGCAGUCGCAGCCA
............................((((.((((((((..(((.......................)))..))))))))))))...... (-15.00 = -16.17 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:50 2006