| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,222,862 – 18,222,977 |
| Length | 115 |
| Max. P | 0.534585 |
| Location | 18,222,862 – 18,222,977 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 81.03 |
| Mean single sequence MFE | -23.61 |
| Consensus MFE | -22.27 |
| Energy contribution | -22.47 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.534585 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18222862 115 + 27905053 --AGUAAAUAAAA-CUAUCAUUACAAAACAAAAAAAAGAAGUCGACGAGGAUGGGAUUCGAACCCACGCGUGCAGAGCACAUUGGAUUAGCAGUCCAACGCCUUAACCACUCGGCCAC --...........-..........................(((((.(.((.((((.......)))).((((((...)))).((((((.....)))))).)).....)).))))))... ( -23.50) >DroVir_CAF1 34717 95 + 1 -----------------------UGAAAUUAAAAAAAAAACUCGACGAGGAUGGGAUUCGAACCCACGCGUGCAGAGCACAUUGGAUUAGCAGUCCAACGCCUUAACCUCUCGGCCAC -----------------------..................((((.((((.((((.......)))).((((((...)))).((((((.....)))))).)).....)))))))).... ( -25.00) >DroSec_CAF1 25176 109 + 1 --AGUAAAUAAAA-AU------AAAAGAAGAAAAAAAGGAGUCGACGAGGAUGGGAUUCGAACCCACGCGUGCAGAGCACAUUGGAUUAGCAGUCCAACGCCUUAACCACUCGGCCAC --...........-..------................(.(((((.(.((.((((.......)))).((((((...)))).((((((.....)))))).)).....)).))))))).. ( -23.70) >DroWil_CAF1 25145 111 + 1 -------AUAAAAUCAAUAAUUUUACAAACAAAAAAAACCUCCGACGAGGAUGGGAUUCGAACCCACGCGUGCAGAGCACAUUGGAUUAGCAGUCCAACGCCAUAACCACUCGGCCAC -------..................................((((.(.((.((((.......)))).((((((...)))).((((((.....)))))).)).....)).))))).... ( -22.30) >DroYak_CAF1 20546 117 + 1 AUAAUUAUUAAAU-CUUUCAUUGCAAAAAUAAAAAAUUAAGUCGACGAGGAUGGGAUUCGAACCCACGCGUGCAGAGCACAUUGGAUUAGCAGUCCAACGCCUUAACCACUCGGCCAC .............-..........................(((((.(.((.((((.......)))).((((((...)))).((((((.....)))))).)).....)).))))))... ( -23.50) >DroAna_CAF1 29157 106 + 1 --AAAACUUAAAA-CUAUCA---------AAAAAAAGUUAGUCGACGAGGAUGGGAUUCGAACCCACGCGUGCAGAGCACAUUGGAUUAGCAGUCCAACGCCUUAACCACUCGGCCAC --..(((((....-......---------.....))))).(((((.(.((.((((.......)))).((((((...)))).((((((.....)))))).)).....)).))))))... ( -23.66) >consensus __A_UAAAUAAAA_CUAUCA___CAAAAAAAAAAAAAAAAGUCGACGAGGAUGGGAUUCGAACCCACGCGUGCAGAGCACAUUGGAUUAGCAGUCCAACGCCUUAACCACUCGGCCAC ........................................(((((.(.((.((((.......)))).((((((...)))).((((((.....)))))).)).....)).))))))... (-22.27 = -22.47 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:48 2006