| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,202,735 – 18,202,845 |
| Length | 110 |
| Max. P | 0.513738 |
| Location | 18,202,735 – 18,202,845 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 83.64 |
| Mean single sequence MFE | -37.38 |
| Consensus MFE | -23.16 |
| Energy contribution | -23.72 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.513738 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18202735 110 - 27905053 AAACAGCAGCUCCUUGGAAACCACCGGCAGCUGCUUUAGCUCCCAUGCUUGAAGCCAGUGGAUCAGGGGAACUGCAUGCCACGGAACGCAGACAAGCGCUUCCAGCAAUA .....((((.((((..((..((((.((((((((...)))))..((....))..))).)))).))..)))).)))).(((...(((((((......))).)))).)))... ( -38.20) >DroSec_CAF1 4743 110 - 1 AAACAGCAGCUCCUUGGAAACCACCGGCAGCUGCUUUAGCUCCCAUGUUUGAAGCCAGUGGAUCAGGGGGACUGCAUGCCACGGAACGCAGACAAGCGCUUUCAACAAAA .....((((((((((((...((((.((((((((...)))))..((....))..))).)))).)))))))).)))).......(((((((......))).))))....... ( -37.40) >DroSim_CAF1 4717 110 - 1 AAACAGCAGCUCCUUGGAAACUACCGGCAGCUGCUUUAGCUCCCAUGUUUGAAGCCAGUGGAUCAGGGGGACUGCAUGCCACGGAACGCAGACAAGCGCUUUCAACAAAA ....(((((((((..(....)....)).)))))))...(((....((((((...((.((((....((....)).....))))))....)))))))))............. ( -35.10) >DroEre_CAF1 4853 110 - 1 AAACAGCAGCUCCUUGGAAACCACCGGCAUCUGCUUUAGUUCCCAGGUUUGAAGCCAGUGGAUCAGGGGGACUGCGUGCCACGGAACGCAAACAAGCGCUUCCAGCAAAA .....((((((((((((...((((.(((.((.((((........))))..)).))).)))).)))))))).)))).(((...(((((((......))).)))).)))... ( -42.00) >DroYak_CAF1 980 110 - 1 AAACAGCAGCUCCUUGGAAACCACCGGCAACUGCUUUAGUUCCCAAGUUUGAAGCCAGUGAAUCAGGGGUACUGCAUGCCAGGGAACGCAAACAAGCGCUUCAAGCAAAA .....((((..(((..((...(((.(((..(.((((........))))..)..))).)))..))..)))..)))).(((...(((.(((......))).)))..)))... ( -30.70) >DroAna_CAF1 7037 110 - 1 AAGAAGCAGCUCCUUGGGUACUAGAGGCAGCUGUAUUUCUCGCCAGCCCAUGAGCCAGUGAAUCAGUGGCACACAAUGCCACUGCACUGUUACCAUGGCCUCCAGCAAUU .((((((((((((((........)))).))))))..)))).((.((.(((((...(((((...((((((((.....)))))))))))))....))))).))...)).... ( -40.90) >consensus AAACAGCAGCUCCUUGGAAACCACCGGCAGCUGCUUUAGCUCCCAUGUUUGAAGCCAGUGGAUCAGGGGGACUGCAUGCCACGGAACGCAGACAAGCGCUUCCAGCAAAA ....(((((((((..(....)....)).)))))))...........(((.(((((..((((..(((.....)))....)))).....((......))))))).))).... (-23.16 = -23.72 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:40 2006