Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 18,197,666 – 18,197,810 |
Length | 144 |
Max. P | 0.999648 |
Location | 18,197,666 – 18,197,770 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 98.08 |
Mean single sequence MFE | -46.51 |
Consensus MFE | -44.57 |
Energy contribution | -44.61 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -2.54 |
Structure conservation index | 0.96 |
SVM decision value | 3.83 |
SVM RNA-class probability | 0.999648 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18197666 104 + 27905053 GGCGCUGGUACCAUCGAUGCCUCUCACGCGGCUGCCAUCGCUGCCGUUGAGGCUGCCACCAAGGCCAAGGCCUCCGCCAUCGUGGUGAUCACCACCAGCGGCAA (.(((((((((((.(((((((((....(((((.((....)).))))).))))).(((.....)))...(((....))))))))))).......))))))).).. ( -47.41) >DroSec_CAF1 5742 104 + 1 GGCGCUGGUACCAUCGAUGCCUCUCACGCGGCUGCCAUCGCUGCCGUUGAGGCUGCCACCAAGGCCAAGGCCUCCGCCAUCGUGGUGAUCACCACCAGCGGCAA (.(((((((((((.(((((((((....(((((.((....)).))))).))))).(((.....)))...(((....))))))))))).......))))))).).. ( -47.41) >DroSim_CAF1 5790 104 + 1 GGCGCUGGUACCAUCGAUGCCUCUCACGCGGCUGCCAUCGCUGCCGUUGAAGCUGCCGCCAAGGCCAAGGCCUCCGCCAUCGUGGUUAUCACCACCAGCGGCAA (.(((((((((((.(((((....(((.(((((.((....)).)))))))).......((..((((....))))..))))))))))).......))))))).).. ( -44.21) >DroEre_CAF1 5976 104 + 1 GGCGCUGGUACCAUCGAUGCCCCUCACGCAGCUGCCAUCGCUGCCGUUGAGGCUGCCACCAAGGCCAAGGCCUCCGCCAUCGUGGUGAUCACCACCAGCGGCAA (.(((((((((((.(((((........(((((.......))))).((.(((((((((.....)))...)))))).))))))))))).......))))))).).. ( -46.11) >DroYak_CAF1 5868 104 + 1 GGCGCUGGUACCAUCGAUGCCUCUCACGCGGCUGCCAUCGCUGCCGUUGAGGCUGCCACCAAGGCCAAGGCCUCCGCCAUCGUGGUGAUCACCACCAGCGGCAA (.(((((((((((.(((((((((....(((((.((....)).))))).))))).(((.....)))...(((....))))))))))).......))))))).).. ( -47.41) >consensus GGCGCUGGUACCAUCGAUGCCUCUCACGCGGCUGCCAUCGCUGCCGUUGAGGCUGCCACCAAGGCCAAGGCCUCCGCCAUCGUGGUGAUCACCACCAGCGGCAA (.(((((((((((.(((((........(((((.......))))).((.(((((((((.....)))...)))))).))))))))))).......))))))).).. (-44.57 = -44.61 + 0.04)
Location | 18,197,666 – 18,197,770 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 98.08 |
Mean single sequence MFE | -47.61 |
Consensus MFE | -47.05 |
Energy contribution | -46.57 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.09 |
Mean z-score | -1.10 |
Structure conservation index | 0.99 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523866 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18197666 104 - 27905053 UUGCCGCUGGUGGUGAUCACCACGAUGGCGGAGGCCUUGGCCUUGGUGGCAGCCUCAACGGCAGCGAUGGCAGCCGCGUGAGAGGCAUCGAUGGUACCAGCGCC ....(((((((.......(((((((((.(.(((((....))))).(((((.(((.....))).((....)).)))))......).))))).))))))))))).. ( -47.31) >DroSec_CAF1 5742 104 - 1 UUGCCGCUGGUGGUGAUCACCACGAUGGCGGAGGCCUUGGCCUUGGUGGCAGCCUCAACGGCAGCGAUGGCAGCCGCGUGAGAGGCAUCGAUGGUACCAGCGCC ....(((((((.......(((((((((.(.(((((....))))).(((((.(((.....))).((....)).)))))......).))))).))))))))))).. ( -47.31) >DroSim_CAF1 5790 104 - 1 UUGCCGCUGGUGGUGAUAACCACGAUGGCGGAGGCCUUGGCCUUGGCGGCAGCUUCAACGGCAGCGAUGGCAGCCGCGUGAGAGGCAUCGAUGGUACCAGCGCC ....(((((((.......(((((((((.(.(((((....))))).(((((.(((.....))).((....)).)))))......).))))).))))))))))).. ( -46.71) >DroEre_CAF1 5976 104 - 1 UUGCCGCUGGUGGUGAUCACCACGAUGGCGGAGGCCUUGGCCUUGGUGGCAGCCUCAACGGCAGCGAUGGCAGCUGCGUGAGGGGCAUCGAUGGUACCAGCGCC ....(((((((.......(((((((((((.(((((....))))).)).....(((((...(((((.......))))).)))))..))))).))))))))))).. ( -49.41) >DroYak_CAF1 5868 104 - 1 UUGCCGCUGGUGGUGAUCACCACGAUGGCGGAGGCCUUGGCCUUGGUGGCAGCCUCAACGGCAGCGAUGGCAGCCGCGUGAGAGGCAUCGAUGGUACCAGCGCC ....(((((((.......(((((((((.(.(((((....))))).(((((.(((.....))).((....)).)))))......).))))).))))))))))).. ( -47.31) >consensus UUGCCGCUGGUGGUGAUCACCACGAUGGCGGAGGCCUUGGCCUUGGUGGCAGCCUCAACGGCAGCGAUGGCAGCCGCGUGAGAGGCAUCGAUGGUACCAGCGCC ....(((((((.......(((((((((.(.(((((....))))).(((((.(((.....))).((....)).)))))......).))))).))))))))))).. (-47.05 = -46.57 + -0.48)
Location | 18,197,690 – 18,197,810 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.67 |
Mean single sequence MFE | -48.48 |
Consensus MFE | -47.74 |
Energy contribution | -47.78 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.22 |
Structure conservation index | 0.98 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.656632 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18197690 120 + 27905053 CACGCGGCUGCCAUCGCUGCCGUUGAGGCUGCCACCAAGGCCAAGGCCUCCGCCAUCGUGGUGAUCACCACCAGCGGCAAGUCGGCCUUCCAGGUGAGCAAGUACCGCCCACGCUGCCCC ...(((((.(((..(..((((((((((((((((.....)))...)))))).......(((((....))))).))))))).)..))).......(((.((.......)).))))))))... ( -48.80) >DroSec_CAF1 5766 120 + 1 CACGCGGCUGCCAUCGCUGCCGUUGAGGCUGCCACCAAGGCCAAGGCCUCCGCCAUCGUGGUGAUCACCACCAGCGGCAAGUCGGCCUUCCAGGUGAGCAAGUACCGCCCACGCUGCCCC ...(((((.(((..(..((((((((((((((((.....)))...)))))).......(((((....))))).))))))).)..))).......(((.((.......)).))))))))... ( -48.80) >DroSim_CAF1 5814 120 + 1 CACGCGGCUGCCAUCGCUGCCGUUGAAGCUGCCGCCAAGGCCAAGGCCUCCGCCAUCGUGGUUAUCACCACCAGCGGCAAGUCGGCCUUCCAGGUGAGCAAGUACCGCCCACGCUGCCCC ...(((((.(((..(..((((((((........((..((((....))))..))....(((((....))))))))))))).)..))).......(((.((.......)).))))))))... ( -46.50) >DroEre_CAF1 6000 120 + 1 CACGCAGCUGCCAUCGCUGCCGUUGAGGCUGCCACCAAGGCCAAGGCCUCCGCCAUCGUGGUGAUCACCACCAGCGGCAAGUCGGCCUUCCAGGUGAGCAAGUACCGCCCACGCUGCCCC ...(((((.(((..(..((((((((((((((((.....)))...)))))).......(((((....))))).))))))).)..))).......(((.((.......)).))))))))... ( -49.50) >DroYak_CAF1 5892 120 + 1 CACGCGGCUGCCAUCGCUGCCGUUGAGGCUGCCACCAAGGCCAAGGCCUCCGCCAUCGUGGUGAUCACCACCAGCGGCAAGUCGGCCUUCCAGGUGAGCAAGUACCGCCCACGCUGCCCC ...(((((.(((..(..((((((((((((((((.....)))...)))))).......(((((....))))).))))))).)..))).......(((.((.......)).))))))))... ( -48.80) >consensus CACGCGGCUGCCAUCGCUGCCGUUGAGGCUGCCACCAAGGCCAAGGCCUCCGCCAUCGUGGUGAUCACCACCAGCGGCAAGUCGGCCUUCCAGGUGAGCAAGUACCGCCCACGCUGCCCC ...(((((.(((..(..((((((((((((((((.....)))...)))))).......(((((....))))).))))))).)..))).......(((.((.......)).))))))))... (-47.74 = -47.78 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:37 2006