Locus 689

Sequence ID 3R_DroMel_CAF1
Location 2,464,543 – 2,464,658
Length 115
Max. P 0.533954
window1095

overview

Window 5

Location 2,464,543 – 2,464,658
Length 115
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 85.35
Mean single sequence MFE -36.17
Consensus MFE -24.63
Energy contribution -25.30
Covariance contribution 0.67
Combinations/Pair 1.07
Mean z-score -1.98
Structure conservation index 0.68
SVM decision value 0.00
SVM RNA-class probability 0.533954
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2464543 115 - 27905053
CUCCCUC-CCUUGUCGGGAAGAGGGGAGGGGUCCUUCCGCCGAAGCUCACAAAUUGUUUG-GGGUGAAUUUUAAUUGCUCCUCAUUGUUUUGAUAGCACCCCAUACAGCUACUCCC---U
(((..((-((.....)))).)))(((((..((.((((....)))).........(((.((-(((((....((((..((........)).))))...))))))).)))))..)))))---. ( -38.60)
>DroSim_CAF1 20785 114 - 1
CAUCC-----UCGUUGGGAAGGGAGGAGGGGUCCUUCCGCCAAAGCUCACAAAUUGUUUG-GGGUGAAUUUUAAUUGCUCCUCAUUGUUUUGAUAGCACCCCAUACAGCUACUCCCUCCU
.....-----.....((((.((((((((.(((......)))....))).....((((.((-(((((....((((..((........)).))))...))))))).))))...))))))))) ( -36.40)
>DroEre_CAF1 24926 112 - 1
CUCACCCGCCUCAUCGGCAG--GGGGAAGGGUCCUUCCGCCAAAGCUCACAAAUUGUUUGGGGGUGAAUUUUAAUUGCUCCUCAUUGUUUUGAUAGCACCCCAUACAGCU---CCC---U
....((((((.....))).)--))(((((....)))))((....)).......((((...((((((....((((..((........)).))))...))))))..))))..---...---. ( -33.50)
>consensus
CUCCC_C_CCUCGUCGGGAAG_GGGGAGGGGUCCUUCCGCCAAAGCUCACAAAUUGUUUG_GGGUGAAUUUUAAUUGCUCCUCAUUGUUUUGAUAGCACCCCAUACAGCUACUCCC___U
...............((((..((.(((((....)))))...............((((.((.(((((....((((..((........)).))))...))))))).))))))..)))).... (-24.63 = -25.30 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:28 2006