| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,194,314 – 18,194,408 |
| Length | 94 |
| Max. P | 0.637249 |
| Location | 18,194,314 – 18,194,408 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 90.99 |
| Mean single sequence MFE | -25.36 |
| Consensus MFE | -21.42 |
| Energy contribution | -20.94 |
| Covariance contribution | -0.48 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.637249 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18194314 94 - 27905053 AUAUGAUUAUAUGGACACGUGAUGUCAGUAUGUGUGUGCGUGGUAAACAAAAAACCGAUCAUCAGCUGUUAGACGGCGCUUAUCAGCUGGCAAU ..((((((..(((.(((((..((....))...))))).)))(((.........)))))))))((((((..((......))...))))))..... ( -20.70) >DroSec_CAF1 2496 84 - 1 ----------AUGGACACGUGAUGUCAGCAUGUGUGUGCGUGGUAAACAAAAAACCGAUCAUCAGCUGUUAGACGGCGCUUACCAGCUGGCAAU ----------............(((((((.((.(((.((.((((.........)))).......((((.....)))))).)))))))))))).. ( -23.70) >DroSim_CAF1 2361 88 - 1 -----AUCAUAUGGACACGUGAUGUCAGCAUGUGUGUGCGUGGUAAACAAAAAACCGAUCAUCAGCUGUUAGACGGCGCUUAUCAGCUGGCAA- -----(((((..(.(((((((.......))))))).)..))))).................(((((((..((......))...)))))))...- ( -22.60) >DroEre_CAF1 2647 89 - 1 -----AUCAUAUGCACACGUGAUGUCGUCAUGUGUGUGCGUGGUAAACAAAAAGCCGAUCAUCAGCUGUUAGACGGCGCUUAUCAGCUGGCAAU -----(((((..(((((((((((...)))))))))))..))))).........((((.......((((.....))))(((....)))))))... ( -31.40) >DroYak_CAF1 2559 89 - 1 -----AUCAUAUGCACACGUGAUGUCGGCAUGUGUGUGCGUGGUAAACAAAAAACCGAUCAUCAGCUGUUAGACGGCGCCUAUCAGCUGGCAAC -----(((((..(((((((((.......)))))))))..))))).................(((((((.(((.......))).))))))).... ( -28.40) >consensus _____AUCAUAUGGACACGUGAUGUCAGCAUGUGUGUGCGUGGUAAACAAAAAACCGAUCAUCAGCUGUUAGACGGCGCUUAUCAGCUGGCAAU ..............(((((((.......))))))).(((.((((.........)))).....((((((.(((.......))).))))))))).. (-21.42 = -20.94 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:25 2006