Locus 6882

Sequence ID 3R_DroMel_CAF1
Location 18,193,425 – 18,193,542
Length 117
Max. P 0.889592
window11172

overview

Window 2

Location 18,193,425 – 18,193,542
Length 117
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.06
Mean single sequence MFE -29.02
Consensus MFE -23.84
Energy contribution -23.24
Covariance contribution -0.60
Combinations/Pair 1.12
Mean z-score -1.73
Structure conservation index 0.82
SVM decision value 0.96
SVM RNA-class probability 0.889592
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18193425 117 + 27905053
AAAC---AUCAUUCCAUUAUAAUACGCUAGAAAUUUUGCUAACGAAAUUGGCGGGGGCAAGACAUUUGUUUUUGCUGUUGUUGAUGAUGCAAGCAAUUUCUCCACAUUAUGUAGAAUUGC
....---...((((...((((((.....((((((..((((..((..((..((((.((((((((....).))))))).))))..))..))..))))))))))....))))))..))))... ( -25.90)
>DroSec_CAF1 1622 117 + 1
AAAC---AUCAUUCCAUUAUAAUACGCUAGAAAUUUUGCUAACGAAAUUGAGGGUGGCAAGACAUUUGUCUUUGCUGUUGUUGAUGAUGCAAGCAAUUUCUCCACAUUAUGUAGAAUUGC
...(---((((((.....((((((((((...(((((((....)))))))...))))(((((((....))).)))))))))).)))))))...((((((.((.((.....)).)))))))) ( -27.60)
>DroSim_CAF1 1486 117 + 1
AAAC---AUCAUUCCAUUAUAAUACGCUAGAAAUUUUGCUAACGAAAUUGGUGGCGGCAAGACAUUUGUCUUUGCUGUUGUUGAUGAUGCAAGCAAUUUCUCCACAUUAUGUAGAAUUGC
...(---((((((.....(((((((((((..(((((((....)))))))..)))))(((((((....))).)))))))))).)))))))...((((((.((.((.....)).)))))))) ( -30.70)
>DroEre_CAF1 1775 117 + 1
AAAC---AUCAUCCCAUUAUAAUACGCUAGUAAUUUCGCUAACGAAUUUGGCGGUGGCAAGAUGUGUGUUGUUGCUGUUGUUGAUGAUGCAAGCAAUUUCUCCACAUUAUGUAGAAUUGC
...(---((((((.....((((((((((((....((((....)))).))))))(..((((.(....).))))..))))))).)))))))...((((((.((.((.....)).)))))))) ( -29.30)
>DroYak_CAF1 1672 120 + 1
CAACCUCAUCAUCUCAUUAUAAUACGCUAGAAAUUUCGCUAACGAAAUUGGCGGUGGCAAGACAUUUGUCGUUGCUGUUGUUGAUGAUGCAAGCAAUUUCUCCACAUUAUGUAGAAUUGC
......(((((((..................(((((((....)))))))(((((..(((((((....))).))))..))))))))))))...((((((.((.((.....)).)))))))) ( -31.60)
>consensus
AAAC___AUCAUUCCAUUAUAAUACGCUAGAAAUUUUGCUAACGAAAUUGGCGGUGGCAAGACAUUUGUCUUUGCUGUUGUUGAUGAUGCAAGCAAUUUCUCCACAUUAUGUAGAAUUGC
.......((((((.....((((((((((...(((((((....)))))))...))))(((((((....))).)))))))))).))))))....((((((.((.((.....)).)))))))) (-23.84 = -23.24 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:22 2006