Locus 6880

Sequence ID 3R_DroMel_CAF1
Location 18,190,353 – 18,190,443
Length 90
Max. P 0.672554
window11169

overview

Window 9

Location 18,190,353 – 18,190,443
Length 90
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 81.81
Mean single sequence MFE -30.17
Consensus MFE -23.40
Energy contribution -23.87
Covariance contribution 0.48
Combinations/Pair 1.19
Mean z-score -1.50
Structure conservation index 0.78
SVM decision value 0.30
SVM RNA-class probability 0.672554
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18190353 90 + 27905053
UGCUACGUAUGC---------------UUAUUUCGACCGU--GAAUGCACACCCUAUUCGUAGUGGUUCGGCUGUGGAUUGGGGUUAUUCCAGCCCUCGUCCACGGC-
.((.......))---------------......(((..((--(....)))((((((....))).))))))(((((((((.((((((.....)))))).)))))))))- ( -30.90)
>DroPse_CAF1 3797 108 + 1
GACUACGUAUACACGACGUUGAUAAACUUUCUUCGAAUAUUUCGUUACACAUUUUACUCGUAGUGAUUCGGUUGCGGAUUCGGAUUGUUCCAGCUCUCGUCCAGGCCG
......((....((((.((((...(((....((((((...(((((.((.....((((.....))))....)).)))))))))))..))).))))..))))....)).. ( -18.50)
>DroSec_CAF1 3365 90 + 1
UGCUACGUAUGC---------------UUGUUUCGACCGU--GAAUGCACACCCUAUUCGUAGUGGUUCGGCUGUGGAUUGGGGUUGUUCCAGCCCUCGUCCACGGC-
.((.......))---------------......(((..((--(....)))((((((....))).))))))(((((((((.(((((((...))))))).)))))))))- ( -32.60)
>DroSim_CAF1 3381 90 + 1
UGCUACGUAUGC---------------UUGUUUCGACCGU--GAAUGCACACCCUAUUCGUAGUGGUUCGGCUGUGGAUUGGGGUUGUUCCAGCCCUCGUCCACGGC-
.((.......))---------------......(((..((--(....)))((((((....))).))))))(((((((((.(((((((...))))))).)))))))))- ( -32.60)
>DroEre_CAF1 3530 90 + 1
UGCUACGUAUGC---------------UCGUUUCGACCAU--GAAUGCACACCCUAUUCGUAGUGGUUCGGCUGUGGAUUAGGGUUAUUCCAGCCCUCGUCCACAGC-
(((....((((.---------------(((...))).)))--)...))).((((((....))).)))...(((((((((.((((((.....)))))).)))))))))- ( -33.20)
>DroYak_CAF1 3562 90 + 1
UGCUACGUAUGG---------------UCGUUUCCACCAU--GAAUGCACUCCCUAUUCGUAGUGGUUCGGCUGCGGAUUGGGGUUAUUCCAGCCCUCGUCCACGGC-
.....(((..((---------------(((...((((.((--(((((.......))))))).))))..)))))..((((.((((((.....)))))).)))))))..- ( -33.20)
>consensus
UGCUACGUAUGC_______________UUGUUUCGACCAU__GAAUGCACACCCUAUUCGUAGUGGUUCGGCUGUGGAUUGGGGUUAUUCCAGCCCUCGUCCACGGC_
.((((((...................................................))))))......(((((((((.((((((.....)))))).))))))))). (-23.40 = -23.87 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:19 2006