| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,185,199 – 18,185,299 |
| Length | 100 |
| Max. P | 0.894298 |
| Location | 18,185,199 – 18,185,299 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 71.56 |
| Mean single sequence MFE | -24.61 |
| Consensus MFE | -18.92 |
| Energy contribution | -18.81 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.25 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.894298 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18185199 100 + 27905053 ----------UAACUGCUGCUUUUGUAUUUAUGAGACAUAUCUAC---------UUA-UUUCUGCAGCACGACGCGUCUGGAAGGACUACUUCCCUGCUGUGGACGCCAUCGUUUUCUUA ----------.....(((((....(((..((((...))))..)))---------...-.....)))))((((.(((((((((((.....))))).......))))))..))))....... ( -27.11) >DroPse_CAF1 4224 85 + 1 ----------AAA-AGU------------UA-------AACUUAC-----AUUUUGACCGAUUGUAGCACGUCGCGUCUGGAAGGACUAUUUCCCCGCUGUGGACGCAAUUGUGUUCUUA ----------...-.((------------((-------((.....-----..)))))).......((((((..(((((((((((.....))))).......))))))...)))))).... ( -17.81) >DroSec_CAF1 1981 100 + 1 ----------UAGCUGCUGCUUUCGUAUUUAUGACCCAUAUCUAC---------UUA-UCUUUGCAGCACGACGCGUCUGGAAGGACUACUUCCCUGCUGUGGAUGCCAUCGUUUUCUUA ----------..(((((.......(((..((((...))))..)))---------...-.....)))))((((.(((((((((((.....))))).......))))))..))))....... ( -26.07) >DroSim_CAF1 1890 100 + 1 ----------UAGCUGCUGCUUUCGUAUUUAUGACCCAUAUCUAC---------AUA-UCUUUGCAGCACGACGCGUCUGGAAGGACUACUUCCCUGCCGUGGAUGCCAUCGUUUUCUUA ----------..(((((.......(((..((((...))))..)))---------...-.....)))))((((.(((((((((((.....))))).......))))))..))))....... ( -26.07) >DroEre_CAF1 1737 118 + 1 CCUUGUGUGAUAACCGCUGCUGUUGUAUUGCUUCU-CAUAUUUAUGGCCCAUGUUCA-CUUUUGCAGCACGACGCGUCUGGAAGGACUACUUCCCCGCUGUGGAUGCCAUCGUUUUCCUA ....((((((.((.((.(((....))).)).)).)-)))))..(((((....(((((-(....((.((.....))....(((((.....)))))..)).))))))))))).......... ( -26.30) >DroYak_CAF1 2045 117 + 1 -CUUUUGUGAUAAGCGCUGCUGUUGUAUUUAUUAU-CAUAUUUACGUCCCUCUUUUA-CUUUUGCAGCACGACGUGUCUGGAAGGACUACUUCCCCGCCGUGGAUGCCAUCGUUUUCUUA -.......(((..(((((((....(((........-...................))-)....))))).(.(((.((..(((((.....)))))..))))).)..)).)))......... ( -24.33) >consensus __________UAACUGCUGCUUUUGUAUUUAUGAC_CAUAUCUAC_________UUA_CUUUUGCAGCACGACGCGUCUGGAAGGACUACUUCCCCGCUGUGGAUGCCAUCGUUUUCUUA ...............(((((...........................................)))))((((.(((((((((((.....))))).......))))))..))))....... (-18.92 = -18.81 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:15 2006