Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 18,182,538 – 18,182,638 |
Length | 100 |
Max. P | 0.633965 |
Location | 18,182,538 – 18,182,638 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 83.40 |
Mean single sequence MFE | -39.15 |
Consensus MFE | -23.31 |
Energy contribution | -23.31 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.32 |
Mean z-score | -2.07 |
Structure conservation index | 0.60 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.633965 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18182538 100 - 27905053 GGACGCAUUUCGGAAUUUAACUGCCCGCGGCUG---CGGGUAGCUUGCGUUUGAUAUGGACUUUUACUUGCGCACUUGCUGUUGCCGCCGCGCGUUCGUAUCG (((((((.............((((((((....)---)))))))..)))))))(((((((((........((((....((....))....))))))))))))). ( -35.96) >DroSec_CAF1 6574 100 - 1 GGACGCAUUUCGGAAUUUAAGUGCCCGCGGUUG---CGGGCAGCUUGAGUUUGAUGUGGGCAUUUAUGUGUGCAAUUGCUGUUGCCGCCGCGCGUUCAGAUCG ((((((......((((((((((((((((....)---)))))).)))))))))...((((((((....))))(((((....)))))..))))))))))...... ( -43.20) >DroSim_CAF1 5557 100 - 1 GGACGCAUUUCGGAAUUUAAGUGCCCGCGGUUG---CGGGCAGCUUGCGUUUGAUGUGGGCUUUUAUGUGUGCAAUUGCUGUUGCCGCCGCGCGUUCGUAUCG ((((((...(((((...(((((((((((....)---)))))).))))..))))).((((((......))(.(((((....)))))).))))))))))...... ( -38.70) >DroEre_CAF1 4586 103 - 1 GGACGCAUUUCGGAAUUUCAGGGCCCGCUGCAGAAAUGGGCAGCUUGCCUUUGAUGGCGGCUUUUGCGUCAGCCCUUGCUGUUGUUGUCGCGCGUUUAGAUCG ((((((...........(((((((..(((((........)))))..))).))))..(((((....(((.((((....)))).))).)))))))))))...... ( -37.70) >DroYak_CAF1 4689 100 - 1 GGACGCAUUUCGGAAUUUUAGAGCCCGCUGCUG---CGGGCAACUUGCGAUUGAUGGGGGCUUUUGCGUAUGCAAUUGCUGUUGUUGUCGCGCGUUUGGAUCG ((((((................((((((....)---))))).....(((((.((..(.(((..((((....))))..))).)..)))))))))))))...... ( -40.20) >consensus GGACGCAUUUCGGAAUUUAAGUGCCCGCGGCUG___CGGGCAGCUUGCGUUUGAUGUGGGCUUUUACGUGUGCAAUUGCUGUUGCCGCCGCGCGUUCGGAUCG ((((((.....((...........))(((((.......((((((..(((.(((....(.((......)).).))).))).)))))))))))))))))...... (-23.31 = -23.31 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:12 2006