Locus 6875

Sequence ID 3R_DroMel_CAF1
Location 18,182,316 – 18,182,416
Length 100
Max. P 0.631744
window11162

overview

Window 2

Location 18,182,316 – 18,182,416
Length 100
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 79.64
Mean single sequence MFE -26.34
Consensus MFE -18.86
Energy contribution -19.02
Covariance contribution 0.16
Combinations/Pair 1.27
Mean z-score -1.54
Structure conservation index 0.72
SVM decision value 0.20
SVM RNA-class probability 0.631744
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18182316 100 - 27905053
CCAAUAAGCGAAAGCUGUGAAAUAUCGAUGUUUGUUUCGUACCAUCGAUUUUGGGGGUAGCACGAGUAAUCGAUGUUUUGGUGGAUAACUCUGCUAGAG-C
((((..(((....))).......(((((((............))))))).))))...(((((.((((.(((.((......)).))).)))))))))...-. ( -28.00)
>DroSec_CAF1 6352 100 - 1
CCAAUAAGCGAAAGCUGCGAAAUAUCGAUGUAUGUUUCGAACUAUCGAUUUUGUGGUUAGCAUGAGUAAUCGAUAUAUUGGUGGGUAACUCUGCUAGAA-C
(((...(((....))).((((((((......))))))))..............)))((((((.((((.(((.((......)).))).))))))))))..-. ( -27.30)
>DroSim_CAF1 5335 100 - 1
CCAAUAAGCGAAAGCUGCGAAAUAUCGAUGUAUGUUUCGAACUAUCGAUUUUGAGGUUAGCAUGAGUAAUCGAUACAUUGGUGGGUAACUCUGCUAGAG-C
((....(((....))).((((((((......))))))))...............))((((((.((((.(((.((......)).))).))))))))))..-. ( -26.60)
>DroEre_CAF1 4364 101 - 1
CCAACAAGCUAAAGCUGUCAAAUAUCGAUGUUUGCUUCGCACUAUCGAUUUCGGUGCUGGCAGAAGUUAUCGAUAUUUUGGUGGGUAACUUUGCUAGAAUC
......(((.(((((..(((((((((((((...(((((((..(((((....)))))...)).))))))))))))).)))))..)....)))))))...... ( -28.70)
>DroYak_CAF1 4480 87 - 1
CCAAUAAGCUAAUGCUGCGAAAAAUCGAUGACUGUUUCGCACU--------------UGUCAGAGGUUAUCGAUGUUUUAGUGGGUAACUUUGCUAGAAGC
......(((....)))((.....((((((((((.(((.((...--------------.)).))))))))))))).((((((..((....))..)))))))) ( -21.10)
>consensus
CCAAUAAGCGAAAGCUGCGAAAUAUCGAUGUAUGUUUCGAACUAUCGAUUUUGGGGUUAGCAGGAGUAAUCGAUAUUUUGGUGGGUAACUCUGCUAGAA_C
......(((....)))((((((((........))))))))................((((((.((((.(((.((......)).))).)))))))))).... (-18.86 = -19.02 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:11 2006