Locus 6872

Sequence ID 3R_DroMel_CAF1
Location 18,175,864 – 18,175,962
Length 98
Max. P 0.559638
window11157

overview

Window 7

Location 18,175,864 – 18,175,962
Length 98
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 87.28
Mean single sequence MFE -24.13
Consensus MFE -16.06
Energy contribution -17.42
Covariance contribution 1.36
Combinations/Pair 1.14
Mean z-score -2.00
Structure conservation index 0.67
SVM decision value 0.05
SVM RNA-class probability 0.559638
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18175864 98 - 27905053
--ACAAACAU--UUUUU-UAAAGUGUUUCCAUCUGAUAGUGCCAAUGAAAAUUGAUAGAAAAUUGGCGCACAAACUGUUUUUAGUUUGGCAACAGCUUACCCG
--..((((((--((...-..))))))))....(((...((((((((...............)))))))).(((((((....)))))))....)))........ ( -22.86)
>DroSec_CAF1 204102 97 - 1
--GCUAACAU--UUUUU-UAAAGUGU-UCCAUCUGAUAGUGCCAAUGAAAAUUGAUAGAAAAUUGGCGCACAAACUGUUUUUAGUUUGGCAACAGCUUACCCG
--((((((((--((...-..))))))-)..........((((((((...............)))))))).(((((((....))))))).....)))....... ( -22.36)
>DroSim_CAF1 212017 97 - 1
--GCUAUCAU--UUUUU-UAAAGUGU-UGCAUCUGAUAGUGCCAAUGAAAAUUGAUAGAAAAUUGGCGCACAAACUGUUUUUAGUUUGGCAACAGCUUACCCG
--........--.....-..((((((-(((........((((((((...............)))))))).(((((((....))))))))))))).)))..... ( -27.26)
>DroEre_CAF1 219919 97 - 1
UAACUUGGAUCUUUUUU-GAAAGUGU-UGCUUGUGAUAACGCCAAUGAAAAUUGAUAGAAAAUU---GCACAGACUGUUUU-AGUUUGGCAACAGCUUACCCG
......((.((......-))((((((-(((.((..((..(..((((....))))...)...)).---.))(((((((...)-)))))))))))).)))..)). ( -20.00)
>DroYak_CAF1 214640 102 - 1
UAACUUGGAUUUUUUUUGGAAAGUAU-UGCAGCUGAUAAUGCCAAUGAAAAUUGAUAGAAAAUUGGCGCACAAACUGUUUUCAGUUUGGCAACAGCUCACCCG
......((((((((....))))))..-((.(((((.....((((((...............))))))((.(((((((....)))))))))..))))))).)). ( -28.16)
>consensus
__ACUAACAU__UUUUU_UAAAGUGU_UGCAUCUGAUAGUGCCAAUGAAAAUUGAUAGAAAAUUGGCGCACAAACUGUUUUUAGUUUGGCAACAGCUUACCCG
....................((((...(((........((((((((...............)))))))).(((((((....))))))))))...))))..... (-16.06 = -17.42 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:32:06 2006