Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,462,631 – 2,462,751 |
Length | 120 |
Max. P | 0.601318 |
Location | 2,462,631 – 2,462,751 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.78 |
Mean single sequence MFE | -38.62 |
Consensus MFE | -33.01 |
Energy contribution | -33.82 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.06 |
Mean z-score | -1.51 |
Structure conservation index | 0.85 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.601318 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2462631 120 - 27905053 AAAAGUUCGAAUCCCCCUGAAUCCGGCUGCUCUGCAAUUGAUGUCCCAAUGCAAUUACCGGCGCAUUGUGCCGCUGACAGUGUGGAUUUGAGAGGCGGUUAAAUGCCGCUCCGAAUUAUU ......(((((((((.(((....((((.....((((.(((......)))))))......(((((...))))))))).))).).))))))))(..(((((.....)))))..)........ ( -38.60) >DroSec_CAF1 21626 120 - 1 AAAAGUUCGAAUCCGCCCGAAUCCGGCUGCUCUGCAAUUGAUGUCCCAAAGCAAUUACCAGCGCAUUGUGCCGCUGACAGUGUGGAUUUGAGAGGCGGUUAAAUGCCGCUCCGGAUUAUU .........(((((...((((((((((((...(((..(((......))).))).....((((((.....).))))).)))).)))))))).(..(((((.....)))))..))))))... ( -37.90) >DroSim_CAF1 18361 120 - 1 AAAAGUUCGAAUCCGCCUGAAUCCGGCUGCUCUGCAAUUGAUGUCCCAAAGCAAUUACCAGCGCAUUGUGCCGCUGACAGUGUGGAUUUGAGAGGCGGUUAAAUGCCGCUCCGGAUUAUU ......(((((((((((((....((((.((..(((..(((......))).((........)))))..))))))....))).))))))))))(..(((((.....)))))..)........ ( -41.00) >DroEre_CAF1 23089 114 - 1 AAAAGUUUGAAUCCGCCA------CUCUGCUCUGCAAUUGAUGUCCCAAAGCAAUUACCGGCGCAUUGUGCCGCUGACAGUGUGGAUUUGAGUGGCGGUUAAGUGCCGCUCCGAAUUAUU ...(((((((((((((.(------((.((((.((..((....))..)).)))).(((.((((((...)))))).))).)))))))))).((((((((......))))))))))))))... ( -37.00) >consensus AAAAGUUCGAAUCCGCCUGAAUCCGGCUGCUCUGCAAUUGAUGUCCCAAAGCAAUUACCAGCGCAUUGUGCCGCUGACAGUGUGGAUUUGAGAGGCGGUUAAAUGCCGCUCCGAAUUAUU ......(((((((((((((........((((.((..((....))..)).)))).....((((((.....).))))).))).))))))))))(..(((((.....)))))..)........ (-33.01 = -33.82 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:22 2006