Locus 6868

Sequence ID 3R_DroMel_CAF1
Location 18,172,142 – 18,172,259
Length 117
Max. P 0.518260
window11149

overview

Window 9

Location 18,172,142 – 18,172,259
Length 117
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 92.70
Mean single sequence MFE -24.50
Consensus MFE -19.58
Energy contribution -19.90
Covariance contribution 0.32
Combinations/Pair 1.12
Mean z-score -1.39
Structure conservation index 0.80
SVM decision value -0.03
SVM RNA-class probability 0.518260
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18172142 117 + 27905053
GCUGCUACCUGUGGCAACCUGUCACAUGCACUUAGCAUACCCCUGCAACCUACAAAUCCGAACACUUUAUAUCGUGCAUACAAAGAUGUA--ACAAACAUGAGCUCUUGAGUGCAACUA
.........((((((.....))))))(((((((((((......)))....................(((((((...........))))))--)..............)))))))).... ( -23.70)
>DroSec_CAF1 200298 116 + 1
GUUGCAAACUGUGGCAACCUGUCACAUGCACUUAGCAUACCCCUGCAACCUACAAAUC-GGACACUUUAUAUCGUGCAUACAAAGAUGUA--ACAAACAUGAGCUCUUCAGUGCAACUA
((((((....(((((.....)))))((((((...(((......)))..((........-))............))))))......((((.--....))))...........)))))).. ( -25.80)
>DroSim_CAF1 208244 116 + 1
UCUGCAACCUGUGGCAACCUGUCACAUGCACUUAGCAUACCCCUGCAACCUACAAAUC-GGACACUUUAUAUCGUGCAUACAAAGAUGUA--ACAAACAUGAGCUCUUGAGUGCAACUA
.........((((((.....))))))(((((((((((......)))..........((-(......(((((((...........))))))--)......))).....)))))))).... ( -24.90)
>DroEre_CAF1 216215 118 + 1
GCUGCAACCUGUGGCAACCUGUCACAAGCACUUAUCAUACCCCUGUAACCUACAAAUC-GGACACUUUAUAUCAUGCAUACAAAGAUGUUAAAGAAACAUGAGCUCUUGAGUGCAACUA
.........((((((.....)))))).(((((((((((.....((((...))))..((-.((((((((.(((.....))).)))).))))...))...)))).....)))))))..... ( -22.20)
>DroYak_CAF1 210818 118 + 1
GCUGCAACCUGUGGCAAGCUGUCACAUGCACUUAGCAUACCCCUGUAACCUACAAAUC-GGACACUUUAUAUCAUGCAUACAAAGAUGUGAAAAAUACAUGAGCGCUUGAGUGCAACUA
.........((((((.....))))))((((((((((...(.(.((((.((........-))....((((((((...........))))))))...)))).).).)).)))))))).... ( -25.90)
>consensus
GCUGCAACCUGUGGCAACCUGUCACAUGCACUUAGCAUACCCCUGCAACCUACAAAUC_GGACACUUUAUAUCGUGCAUACAAAGAUGUA__ACAAACAUGAGCUCUUGAGUGCAACUA
.........((((((.....))))))(((((((((((......))).........................(((((..((((....)))).......))))).....)))))))).... (-19.58 = -19.90 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:58 2006