Locus 6864

Sequence ID 3R_DroMel_CAF1
Location 18,164,989 – 18,165,093
Length 104
Max. P 0.964732
window11139

overview

Window 9

Location 18,164,989 – 18,165,093
Length 104
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 95.38
Mean single sequence MFE -43.20
Consensus MFE -38.00
Energy contribution -38.68
Covariance contribution 0.68
Combinations/Pair 1.06
Mean z-score -1.72
Structure conservation index 0.88
SVM decision value 1.57
SVM RNA-class probability 0.964732
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18164989 104 + 27905053
GGUUGUCUGGAACUGCAAAUGGGCCAAAAAGCUGAAGAGCCGGGCUGAGUUCAGCUGGCUGAUUGCUCCAAUUGCCAGGCGACCGGGCACGCACGGCUGCCUCA
((((((((((....((((.(.((((.....(((....)))..(((((....))))))))).)))))........))))))))))(((((.((...))))))).. ( -43.70)
>DroSec_CAF1 193296 104 + 1
GGUUGUCUGAAGCUGCAAAUGGGCCAAAAAGCUGAAGAGCCGGGCUGAGUUCAGCUGGCUGAUUGCUCCAAUUGCCAGGCGACCGGGCACGCACGGCUGCCUCA
(((((((((.....((((.(((((((......))...((((((.(((....)))))))))....)).))).)))))))))))))(((((.((...))))))).. ( -41.90)
>DroSim_CAF1 201059 104 + 1
GGUUGUCUGGAGCUGCAAGUGGGCCAAAAAGCUGAAGAGCCGGGCUGAGUUCAGCUGGCUGAUUGCUCCAAUUGCCAGGCGACCGGGCACGCACGGCUGCCUCA
(((((((((((((((.((.(.((((.....(((....)))..)))).).)))))))(((.....))).......))))))))))(((((.((...))))))).. ( -44.00)
>DroEre_CAF1 209118 103 + 1
GGUUGUCUGGAGCUGCAAAUGGGCCGAAAAGCUGGAGAGCUGG-UGGAGUUCAGCUGUCUGAUUGCUCCAAUUGCCAGGCGACCGGGCACGCACGGCUGCCUCA
((((((((((....((((...(((......)))(((.((((((-......)))))).)))..))))........))))))))))(((((.((...))))))).. ( -41.60)
>DroYak_CAF1 203571 104 + 1
GGUUGUCUGGAGCUGCAAAUGGGCCAAAAAGCUGGAGAGCUGGGCUGAGUUGAGCUGGCUGAUUGCUCCAAUUGCCAGGCGACCGGGCACGCACGGCUGCCUCA
((((((((((((((.(((.(.((((....((((....)))).)))).).)))))))(((.....))).......))))))))))(((((.((...))))))).. ( -44.80)
>consensus
GGUUGUCUGGAGCUGCAAAUGGGCCAAAAAGCUGAAGAGCCGGGCUGAGUUCAGCUGGCUGAUUGCUCCAAUUGCCAGGCGACCGGGCACGCACGGCUGCCUCA
((((((((((....(((.((.((((.....(((....)))..(((((....))))))))).)))))........))))))))))(((((.((...))))))).. (-38.00 = -38.68 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:49 2006