Locus 6863

Sequence ID 3R_DroMel_CAF1
Location 18,158,365 – 18,158,485
Length 120
Max. P 0.890598
window11138

overview

Window 8

Location 18,158,365 – 18,158,485
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 83.12
Mean single sequence MFE -22.48
Consensus MFE -14.70
Energy contribution -15.83
Covariance contribution 1.13
Combinations/Pair 1.12
Mean z-score -2.26
Structure conservation index 0.65
SVM decision value 0.96
SVM RNA-class probability 0.890598
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18158365 120 - 27905053
ACCAAAUAUCGUCACAAUAAAUAAACGUAUAUGUUUCCUUAAUAGGAGACAAAGUUGCUAUAGCCAUGAGUCACUUAAGAAAUUAAUUAUCUUGAUGUUAUGUAUAAACACAAAGUCAAA
.....(((.(((((..((((.(((.......((((((((....))))))))((((.(((.........))).))))......))).))))..))))).)))................... ( -19.60)
>DroSec_CAF1 186724 111 - 1
CCCAAAUAUCGACAUAUUAAAUAAAAGUAUACGUUUCCUUAAUAGGAGACA---------UAGCCAUGAGUCAGUUAAGAAAUUAAUUAUCUUGAUUUUUUGUAUAAGCACAAAGUCAAA
..........((((((((.......)))))..(((((((....))))))).---------.........)))((((((....))))))...((((((((.(((....))).)))))))). ( -23.00)
>DroSim_CAF1 193402 110 - 1
CCCAAA-AUCGACAUAUUAAAUAAACGUAUACGUUUCCUUAAUAGGAGACA---------UAGCCAUGAGUCAGUUAAGAAAUUAAUUAUCUUGAUUUUUUGUAUAAGCACAAAGUCAAA
......-...(((.((((((..(((((....)))))..))))))(....).---------.........)))((((((....))))))...((((((((.(((....))).)))))))). ( -22.60)
>DroYak_CAF1 197077 113 - 1
CCUAAAUAUUGACAGUUAAAAUAAACGU------UUCCUUAAUGGGAGACAAAGUUGCUAUAGCCAUGAGUCAGUUG-GAAAUUAAUUAUCUUGAUCAUGUGUAUAAACACAAAGUCAAU
((.....((((((.............((------(((((....)))))))......((....)).....)))))).)-)............(((((..(((((....)))))..))))). ( -24.70)
>consensus
CCCAAAUAUCGACAUAUUAAAUAAACGUAUACGUUUCCUUAAUAGGAGACA_________UAGCCAUGAGUCAGUUAAGAAAUUAAUUAUCUUGAUUUUUUGUAUAAACACAAAGUCAAA
................................(((((((....))))))).................(((..((((((....))))))..)))((((((.(((....))).))))))... (-14.70 = -15.83 +   1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:48 2006