Locus 6862

Sequence ID 3R_DroMel_CAF1
Location 18,153,444 – 18,153,553
Length 109
Max. P 0.793244
window11137

overview

Window 7

Location 18,153,444 – 18,153,553
Length 109
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 94.19
Mean single sequence MFE -33.02
Consensus MFE -30.72
Energy contribution -31.00
Covariance contribution 0.28
Combinations/Pair 1.07
Mean z-score -1.22
Structure conservation index 0.93
SVM decision value 0.59
SVM RNA-class probability 0.793244
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18153444 109 - 27905053
AAAACAUCUUGGCAAGCCAACUGCCAACACUUGACAUUCGCCAUGAAUGCAGCCGAGAUCAGCGGGACCUUCGGUCCUGCAGAGGGUGGUACACUCGAAAAAA-G-AGUCU
.....((((((((..((.....)).......((.(((((.....)))))))))))))))..((((((((...))))))))...(((((...))))).......-.-..... ( -34.40)
>DroSec_CAF1 181826 109 - 1
AAAACAUCUUGGCAAGCCAACUGCCAACACUUGACAUUCGCCAUGAAUGCAGCCGAGAUCAGCGGGACCUUCGGUCCUGCAGGGGGUUGUACACUCGAAAAAA-C-AGUCU
.....((((((((..((.....)).......((.(((((.....)))))))))))))))..((((((((...))))))))...((..(((............)-)-)..)) ( -32.50)
>DroSim_CAF1 188431 109 - 1
AAAACAUCUUGGCAAGCCAACUGCCAACACUUGACAUUCGCCAUGAAUGCAGCCGAGAUCAGCGGGACCUUCGGUCCUGCAGGGGGUGGUACACUCGAAAAAA-G-AGUCU
.........(((....)))((..((..(.((((.(((((.....)))))....))))....((((((((...)))))))).)..))..))..((((.......-)-))).. ( -34.30)
>DroEre_CAF1 193661 110 - 1
AAAACAUCUUGGCAAGCCAACUGCCAACACUUGACAUUCGCCAUGAAUGCAGCCGAGAUCAGCGGGGCCUUCGGUCCUGCAGGGGGUGGUACACUCGAAAAAAAG-GCUCU
........((((((.......))))))....((.(((((.....)))))))(((.......((((((((...))))))))...(((((...)))))........)-))... ( -33.70)
>DroYak_CAF1 192158 111 - 1
AAAACAUCUUGGCAAGCCAACUGCCAACACUUGACAUUCGCCAUGAAUGCAGUCGAGAUCAGCGGGACCUUCGCUCCUCCAGGGGGUGCUACACUCGACAAAAAGGGGCCC
........((((....))))..(((......((.(((((.....)))))))((((((...((((....)...(((((.....))))))))...)))))).......))).. ( -30.20)
>consensus
AAAACAUCUUGGCAAGCCAACUGCCAACACUUGACAUUCGCCAUGAAUGCAGCCGAGAUCAGCGGGACCUUCGGUCCUGCAGGGGGUGGUACACUCGAAAAAA_G_AGUCU
.....((((((((..((.....)).......((.(((((.....)))))))))))))))..((((((((...))))))))...(((((...)))))............... (-30.72 = -31.00 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:47 2006