| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,152,343 – 18,152,435 |
| Length | 92 |
| Max. P | 0.521797 |
| Location | 18,152,343 – 18,152,435 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 80.22 |
| Mean single sequence MFE | -23.28 |
| Consensus MFE | -12.99 |
| Energy contribution | -12.97 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.56 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.521797 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18152343 92 + 27905053 CUGCAAUUUUCUCAAGAAGCCGCACUUAAAUGGC-UUCCUAUGCGGGUGCAAACAAAAGCU----GCAAA--CACAC----AC-ACACACACAUAUGUC---UA--CGC- ..((...........(((((((........))))-)))...(((((.(.........).))----)))..--.....----..-...............---..--.))- ( -15.40) >DroVir_CAF1 203813 102 + 1 CAGCAAUUUUCUCAAGAAGCCGCACUUAAAUGGC-UUCCUGUGCGGGUGCAAACAAAAGCUGACUGCCAGCC-AGCUGCAUACGGCACACACAUGUGCC---AA--UUC- ((((...........(((((((........))))-)))(((.((((..((........))...)))))))..-.)))).....((((((....))))))---..--...- ( -34.00) >DroPse_CAF1 182406 91 + 1 CUGCAAUUUUCUCAAGAAGCCGCACUUAAAUGGCUUCCCCAUGCGGGUGCAAACAAAAGCU----GCCACAC-ACAC---------ACACACACAUGUC---UA--CCCU .((((..........(((((((........)))))))(((....)))))))..........----.......-....---------.............---..--.... ( -16.30) >DroGri_CAF1 197681 89 + 1 CGGCAAUUUUCUCAAGAAGCCGCACUUAAAUGGC-UUCCCGUGCGGGUGCAAACAAAAGCU----GCCAGGC-AGU---------CACACACAUGUCUA---UA--CCC- .((((..((((....))))..((((((..((((.-...))))..))))))..........)----)))((((-(((---------.....)).))))).---..--...- ( -22.30) >DroMoj_CAF1 233595 93 + 1 CGGCAAUUUUCUCAAGAAGCCGCACUUAAAUGGC-UUCCUGUGCGGGUGCAAACAAAAGCUGACUGCCAGCC-AGU---------CACACACAUGUGUC---GA--CCC- .(((...........(((((((........))))-))).((.((((..((........))...)))))))))-.((---------(((((....)))).---))--)..- ( -29.30) >DroAna_CAF1 175908 98 + 1 CUGCAAUUUUCUCAAGAAGCCGCACUUAAAUGGC-UUCCUAUGCGGGUGCAAACAAAAGCU----GCCAAAC-ACAC----AC-UCGCACACAUGUGCCACAUACUUGC- ..((((.........(((((((........))))-))).((((.((((((........)).----)))....-....----..-..((((....))))).)))).))))- ( -22.40) >consensus CUGCAAUUUUCUCAAGAAGCCGCACUUAAAUGGC_UUCCUAUGCGGGUGCAAACAAAAGCU____GCCAGAC_ACAC________CACACACAUGUGUC___UA__CCC_ ..((...((((....))))..((((((..((((.....))))..))))))........))..........................((((....))))............ (-12.99 = -12.97 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:46 2006