Locus 6860

Sequence ID 3R_DroMel_CAF1
Location 18,148,712 – 18,148,814
Length 102
Max. P 0.973028
window11135

overview

Window 5

Location 18,148,712 – 18,148,814
Length 102
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 69.67
Mean single sequence MFE -27.03
Consensus MFE -14.22
Energy contribution -14.37
Covariance contribution 0.15
Combinations/Pair 1.46
Mean z-score -2.04
Structure conservation index 0.53
SVM decision value 1.70
SVM RNA-class probability 0.973028
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18148712 102 + 27905053
AUAGUUAUCAAUCUGAUAUGAAGCCGUGGAUUAGUACGAACCCCAGUCGUACUUCCCCACAACGCUCCGGAAAUCCGGCAGUUAAACCCAUUGACUGCUGAU
.....((((.....))))((.(((.((((...(((((((.......)))))))...))))...))).))......((((((((((.....)))))))))).. ( -30.20)
>DroPse_CAF1 178649 102 + 1
AGGGGUCUCACCUCACAUACCCCCGAAUUGACCCUAAUCCAUGAUUAUGAACCCCAUUCAGCGAUAUUCUAUCGUUGAUUGAAUAAUCACUCAGUGGAAAGG
.((((((......................))))))..(((((((((((......((.(((((((((...))))))))).)).))))))).....)))).... ( -25.95)
>DroSec_CAF1 177171 102 + 1
AUAGUUAUCAAUCUGAUAUGAAGCCAUGGAUUAGUACGAACCCCAGUCGUACUUCCCCACAUCGCUCCGGAAAUCCGGCAGUUAAACCCAUUGACUGCUGAU
.....((((.....))))((.(((.(((....(((((((.......)))))))......))).))).))......((((((((((.....)))))))))).. ( -27.00)
>DroSim_CAF1 183811 102 + 1
AUAGUUAUCAAUCUGAUAUGAAGCCAUGGAUUAGUACGAACCCCAGUCGUACUUCCCCACAACGCUCCGGAAAUCCGGCAGUUAAACCCAUUGACUGCUGAU
.....((((.....))))((.(((..(((...(((((((.......)))))))...)))....))).))......((((((((((.....)))))))))).. ( -27.00)
>DroEre_CAF1 188978 102 + 1
AUAGUUAUCAAUCUGAUAUGAAGCCGUGGAUUAGUGUGAGCCCCAAACUAACUUCCCCACAAUGCUGCGGAAAUCCGGCAGUUAAACCCAUUGACUGCUGAU
...........((((......(((.((((.(((((.((.....)).))))).....))))...))).))))....((((((((((.....)))))))))).. ( -24.40)
>DroYak_CAF1 187295 102 + 1
AUAGUUAUCAAUCUGAUAUGAAGCCGUGGAUUAGUAAGAGCCCCAGACUUGCUUCCCCACAACGCUGCGGAAAUCCGGCAGUUAAACCCAUUGACUGCUGAU
...........((((......(((.((((...((((((.........))))))...))))...))).))))....((((((((((.....)))))))))).. ( -27.60)
>consensus
AUAGUUAUCAAUCUGAUAUGAAGCCAUGGAUUAGUACGAACCCCAGACGUACUUCCCCACAACGCUCCGGAAAUCCGGCAGUUAAACCCAUUGACUGCUGAU
...........((((..(((....)))(((..((((((.........)))))))))...........))))....((((((((((.....)))))))))).. (-14.22 = -14.37 +   0.15)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:45 2006