Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,462,134 – 2,462,278 |
Length | 144 |
Max. P | 0.935264 |
Location | 2,462,134 – 2,462,254 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.06 |
Mean single sequence MFE | -49.43 |
Consensus MFE | -45.76 |
Energy contribution | -45.83 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.06 |
Mean z-score | -2.12 |
Structure conservation index | 0.93 |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.925545 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2462134 120 + 27905053 GGGGAUGAGGGCGCAAAAAUGGGGACGACGAAAAUGGUCUGGCAUGGGGUGAAAUGUCUGCUCCGGCUUCCUUGUUGCCACAGAAGGUGUCGCUGCACUGGCAGUGGCGCGCUGUUGUGG ((.((..((((.((.....(((((.((((.......))).(((((........))))).)))))))).))))..)).))((((.((((((((((((....)))))))))).)).)))).. ( -46.00) >DroSec_CAF1 21120 117 + 1 GGGGAUGAGGGCGCAAAAAUGGGGAC---GCAAAUGGCCUGGCAAGGGGUGAAAUGUCUGCGCCGGCUUCCUUGUUGCCACAGAAGGUGUCGCUGCACUGGCAGUGGCGCGCUGUUGUGG (((((.(..((((((.....(....)---(((..(.((((......)))).)..))).))))))..).)))))....((((((.((((((((((((....)))))))))).)).)))))) ( -50.00) >DroSim_CAF1 17855 117 + 1 GAGGAUGAGGGCGCAAAAAUGGGGAC---GCAAAUGGCCUGGCAUGGGGUGAAAUGUCUGCGCCGGCUUCCUUGUUGCCACAGAAGGUGUCGCUGCACUGGCAGUGGCGCGCUGUUGUGG (((((.(..((((((.....(....)---(((..(.((((......)))).)..))).))))))..).)))))....((((((.((((((((((((....)))))))))).)).)))))) ( -50.80) >DroEre_CAF1 22594 117 + 1 GGGGAUGAGGGAGCAAAAAUGGGGAC---GCAAAUGGCCUGGCAUGGGGUGAAAUGUCUGCUCCGGCUUCCUUGUUGCCACAGAAGGUGUCGCUGCACUGGCAGUGGCGCGCUGUUGUGG ((.((..(((((((.....(((((..---(((..(.((((......)))).)..)))...))))))))))))..)).))((((.((((((((((((....)))))))))).)).)))).. ( -50.90) >consensus GGGGAUGAGGGCGCAAAAAUGGGGAC___GCAAAUGGCCUGGCAUGGGGUGAAAUGUCUGCGCCGGCUUCCUUGUUGCCACAGAAGGUGUCGCUGCACUGGCAGUGGCGCGCUGUUGUGG (((((.(..((((((.....(....)..............(((((........)))))))))))..).)))))....((((((.((((((((((((....)))))))))).)).)))))) (-45.76 = -45.83 + 0.06)
Location | 2,462,174 – 2,462,278 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 98.88 |
Mean single sequence MFE | -48.38 |
Consensus MFE | -46.25 |
Energy contribution | -46.75 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.92 |
Structure conservation index | 0.96 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.935264 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2462174 104 + 27905053 GGCAUGGGGUGAAAUGUCUGCUCCGGCUUCCUUGUUGCCACAGAAGGUGUCGCUGCACUGGCAGUGGCGCGCUGUUGUGGCAAAACACGAGCCCGCAUCAUCAG .((..(((((((....)).)))))(((((.....(((((((((.((((((((((((....)))))))))).)).))))))))).....))))).))........ ( -48.50) >DroSec_CAF1 21157 104 + 1 GGCAAGGGGUGAAAUGUCUGCGCCGGCUUCCUUGUUGCCACAGAAGGUGUCGCUGCACUGGCAGUGGCGCGCUGUUGUGGCAAAACACGAGCCCGCAUCAUCAG .......(((((......((((..(((((.....(((((((((.((((((((((((....)))))))))).)).))))))))).....)))))))))))))).. ( -47.90) >DroSim_CAF1 17892 104 + 1 GGCAUGGGGUGAAAUGUCUGCGCCGGCUUCCUUGUUGCCACAGAAGGUGUCGCUGCACUGGCAGUGGCGCGCUGUUGUGGCAAAACACGAGCCCGCAUCAUCAG (((((........)))))((((..(((((.....(((((((((.((((((((((((....)))))))))).)).))))))))).....)))))))))....... ( -48.60) >DroEre_CAF1 22631 104 + 1 GGCAUGGGGUGAAAUGUCUGCUCCGGCUUCCUUGUUGCCACAGAAGGUGUCGCUGCACUGGCAGUGGCGCGCUGUUGUGGCAAAACACGAGCCCGCAUCAUCAG .((..(((((((....)).)))))(((((.....(((((((((.((((((((((((....)))))))))).)).))))))))).....))))).))........ ( -48.50) >consensus GGCAUGGGGUGAAAUGUCUGCGCCGGCUUCCUUGUUGCCACAGAAGGUGUCGCUGCACUGGCAGUGGCGCGCUGUUGUGGCAAAACACGAGCCCGCAUCAUCAG .((..(((((((....)).)))))(((((.....(((((((((.((((((((((((....)))))))))).)).))))))))).....))))).))........ (-46.25 = -46.75 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:21 2006