| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,141,233 – 18,141,333 |
| Length | 100 |
| Max. P | 0.690668 |
| Location | 18,141,233 – 18,141,333 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 78.47 |
| Mean single sequence MFE | -32.85 |
| Consensus MFE | -21.60 |
| Energy contribution | -22.13 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.690668 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18141233 100 + 27905053 AA-GUCACG--GUUCGAAGUCGAAGCAUAUGCUUACCAAGUACUUGCCGGGCACAUAGAGCGGCUGGCUGUGGCUGGUGGGCAUCACCGAGGAGCUGACCAGA ..-((((((--.((((....)))).)..((((((((((..(((..(((((.(.(.....).).))))).)))..)))))))))).........).)))).... ( -34.90) >DroPse_CAF1 171511 92 + 1 AAAGCCAAG-AGUUCGU----------UCCGCUUACCAAAUACUUGCCGGGCACAUACAGCGGCUGGCUGUGGCUGGUGGGCAUCACGGAGGAGCUAACCAGC ...((....-(((((.(----------(((((((((((..(((..(((((.(.(.....).).))))).)))..)))))))).....))))))))).....)) ( -33.10) >DroWil_CAF1 188096 91 + 1 AAAGUCAAA--GUUCAC----------UUUGCUUACCAAAUACUUGCCAGGCACAUAAAGUGGCUGACUGUGGCUGGUUGGCAUUACCGAAGAGCUAACAAGA .(((.((((--(....)----------)))))))........((((.(((.(((.....))).)))....(((((..((((.....))))..))))).)))). ( -26.00) >DroMoj_CAF1 220385 90 + 1 -AAGUCAAU--GUGCUC----------UCUGCUUACCAAAUACUUUCCGGGCACAUAAAGCGGCUGACUGUGGCUGGUGGGCAGCACCGAGGAGCCCACGAGU -.......(--(.((((----------(((((((((((..(((....(((.(.(.....).).)))...)))..))))))))))......))))).))..... ( -27.50) >DroAna_CAF1 164691 101 + 1 AAGGUCAUAGGGUACCAG-GAAUGGCGU-CGCUUACCAAGUACUUGCCGGGCACAUACAGUGGCUGGCUGUGGCUGGUGGGCAGCACCGAGGAACCGACCAGA ..((((....(((.((.(-(....((..-.((((((((..(((..(((((.(((.....))).))))).)))..)))))))).)).))..)).)))))))... ( -43.00) >DroPer_CAF1 198072 92 + 1 AAAGCCAAG-AGUUCGU----------UCCGCUUACCAAAUACUUGCCGGGCACAUACAGCGGCUGGCUGUGGCUGGUGGGCAUCACGGAGGAGCUAACCAGU .........-(((((.(----------(((((((((((..(((..(((((.(.(.....).).))))).)))..)))))))).....)))))))))....... ( -32.60) >consensus AAAGUCAAG__GUUCGA__________UCCGCUUACCAAAUACUUGCCGGGCACAUACAGCGGCUGGCUGUGGCUGGUGGGCAUCACCGAGGAGCUAACCAGA ..............................((((((((..(((..(((((.(.(.....).).))))).)))..))))))))..................... (-21.60 = -22.13 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:38 2006