| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,139,009 – 18,139,109 |
| Length | 100 |
| Max. P | 0.947915 |
| Location | 18,139,009 – 18,139,109 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 69.97 |
| Mean single sequence MFE | -21.32 |
| Consensus MFE | -11.95 |
| Energy contribution | -12.45 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.56 |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.947915 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18139009 100 - 27905053 GUU----UUAU-----------AUAUUAUCCUUAAAACUAAUUAAACGCAUUUUUAUUUGCAAAAUGAGUUAUAAAUUG-AACUUGGUGUACUGUUUCUGAGUGCAUUGAGUGCUG (((----(((.-----------..........))))))......(((.((((((.......)))))).)))........-.(((..(((((((.......)))))))..))).... ( -19.50) >DroSec_CAF1 167646 104 - 1 GUUUUUUUUAU-----------AUAUAGUCCUUAAAUCUAAUUAAUCGCAUUUUUAUUAACCAAAUGAAUUGUAAAUUG-AACUUGGUGUACUUUUUCUGAGUGCAUCGAGUUCUG ...........-----------.........................(((..((((((.....)))))).))).....(-((((((((((((((.....))))))))))))))).. ( -23.30) >DroSim_CAF1 172560 99 - 1 GUU----UUAU-----------AUAUAGUCCUUAAAUCUAAUUAAUCGCAUUUUUAUUUGCCAAAUUAGUUGUAAGUUG-AACUUGGUGUACUUUUU-UGAGUGCAUCGAGUGCUG ...----....-----------...((((.((((...((((((....(((........)))..))))))...))))...-.(((((((((((((...-.))))))))))))))))) ( -25.30) >DroYak_CAF1 176598 106 - 1 GUUUAUUUUUCGAAUCUUAAGAUUAUUGUUUCUUAAGCUUAUUAAU---------UAUUGUAACAUAAACUAUGAGUGAUAACUUAA-GUGAUUUUUCUGAGUGCAUCGAGUGCUG ........(((((..((((.((.....(((.((((((.((((((.(---------(((.((.......)).)))).)))))))))))-).)))...))))))....)))))..... ( -17.20) >consensus GUU____UUAU___________AUAUAGUCCUUAAAUCUAAUUAAUCGCAUUUUUAUUUGCAAAAUGAAUUAUAAAUUG_AACUUGGUGUACUUUUUCUGAGUGCAUCGAGUGCUG .................................................................................(((((((((((((.....))))))))))))).... (-11.95 = -12.45 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:36 2006