Locus 6853

Sequence ID 3R_DroMel_CAF1
Location 18,136,220 – 18,136,329
Length 109
Max. P 0.751498
window11121

overview

Window 1

Location 18,136,220 – 18,136,329
Length 109
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 77.10
Mean single sequence MFE -24.24
Consensus MFE -12.94
Energy contribution -13.18
Covariance contribution 0.24
Combinations/Pair 1.23
Mean z-score -1.91
Structure conservation index 0.53
SVM decision value 0.48
SVM RNA-class probability 0.751498
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18136220 109 + 27905053
UUUGCCUGGCUCAAAAAUGCAAAUCGCUUUCUCUGUCACCGAAUAGAGAUGGGAUAUGCUAGUGCAGCUCGAAGA-AUAGAAAUAUCCCUUUAAAAUAAACACCUAGGCA
..(((((((((((.....(((.(((.((.(((((((......))))))).))))).)))...)).)))..((((.-(((....)))..))))............)))))) ( -28.20)
>DroSec_CAF1 164836 109 + 1
UUUGCCUGGCUCAAAAAUGCAAAUCGCAUUCUCUGUCACCGAAUAGAGAUGGGAAAUCCGAGUGCAGCUCAAAGA-AUAGAAAUAUCACAUGAAAAUAAACACCUAGGCU
...((((((((((...((((.....))))(((((((......)))))))))))......(((.....))).....-...........................)))))). ( -24.20)
>DroSim_CAF1 169718 109 + 1
UUUGCCUGGCUCAAAAAUGCAAAUCGCAUUCUCUGUCACCGAAUAGAGAUGGGAAAUCCGAGUGCAGCUCGAAGA-AUAGAAAUAUCACAUUAAAAUAAACACCUAGGCA
..(((((((((((...((((.....))))(((((((......))))))))))).....((((.....))))....-...........................))))))) ( -26.60)
>DroEre_CAF1 176418 96 + 1
UUUGCCAGGCUCAAAAAUGCAAAUCGCAUUCUCCGUCACCGAACAGAGAUGAGGUAUGCUAUUGUGCCUCAAAGAAAUAUAAAUAGCGGGU----AUAGC----------
..((((..((........))....(((..((((.((......)).))))((((((((......))))))))..............))))))----)....---------- ( -24.70)
>DroYak_CAF1 173696 89 + 1
UUUGCCAGGCUCAAAAAUGCAAAUCGCAUUCUCUGUCACCGAAUAGAGAUGAGUUAUUCUUGCGCACCUCAAAGAAAUAGAAACAGAAA---------------------
..(((((((((((...((((.....))))(((((((......))))))))))).....)))).))).......................--------------------- ( -17.50)
>consensus
UUUGCCUGGCUCAAAAAUGCAAAUCGCAUUCUCUGUCACCGAAUAGAGAUGGGAUAUCCUAGUGCAGCUCAAAGA_AUAGAAAUAUCACAU_AAAAUAAACACCUAGGC_
..(((((((((((...((((.....))))(((((((......))))))))))).....)))).)))............................................ (-12.94 = -13.18 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:32 2006