Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 18,125,865 – 18,125,955 |
Length | 90 |
Max. P | 0.653580 |
Location | 18,125,865 – 18,125,955 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 86.12 |
Mean single sequence MFE | -29.52 |
Consensus MFE | -20.76 |
Energy contribution | -21.04 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.11 |
Mean z-score | -1.85 |
Structure conservation index | 0.70 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.653580 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18125865 90 - 27905053 GGAUGCGAAGAUUGCUAGGCAAUUAGCUAAGGCAGAUUGCCGGGGCUCCUAAGCAGACACUUGUCGCCACGCCAGUUGGCGCCAAAACGU (..(((..((...(((.(((((((.((....)).)))))))..)))..))..)))..)..(((.((((((....).))))).)))..... ( -31.90) >DroSec_CAF1 154510 90 - 1 GGAUGCGGAGAUUGCUAGGCAAUUAGCUAAGGCAGAUUGCCGGGGCUCCUAAGCAGACACUUGUCGCCACGCCAGUUGGCGUCAAAACGU (..(((..((...(((.(((((((.((....)).)))))))..)))..))..)))..)..(((.((((((....).))))).)))..... ( -34.00) >DroSim_CAF1 159391 90 - 1 GGAUGCGGAGAUUGCUAGGCAAUUAGCUAAGGCAGAUUGCCGGGACUUCUAAGCAGACACUUGUCACCACGCCAGUUGGCGCCAAAACGU ((.(((..(((...((.(((((((.((....)).))))))).))...)))..)))(((....))).)).((((....))))......... ( -32.20) >DroEre_CAF1 165979 76 - 1 GGAUGCAGAGAUUGCUAGGCAAUUAUCUAAGGCAGAUUGCCGGCGCUCCUAA--------------CCACGCCAGUUGGCGCCAAAACGU (((((((((((((((...)))))).)))..(((.....))).))).)))...--------------...((((....))))......... ( -22.30) >DroYak_CAF1 163040 76 - 1 GGAUGCGGAGAUUGCUAGGCAAUUAGCUAAGGCAGAUUGCCGGAGCUUCUAA--------------CAACGCCAGUUGGCGCCAAAACGU ((.(((..(((..(((.(((((((.((....)).)))))))..))).)))..--------------((((....)))))))))....... ( -27.20) >consensus GGAUGCGGAGAUUGCUAGGCAAUUAGCUAAGGCAGAUUGCCGGGGCUCCUAAGCAGACACUUGUC_CCACGCCAGUUGGCGCCAAAACGU ((....((((.......(((((((.((....)).)))))))....))))....................((((....))))))....... (-20.76 = -21.04 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:27 2006