Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,460,451 – 2,460,566 |
Length | 115 |
Max. P | 0.794704 |
Location | 2,460,451 – 2,460,566 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 95.07 |
Mean single sequence MFE | -35.75 |
Consensus MFE | -33.36 |
Energy contribution | -33.80 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.07 |
Mean z-score | -1.67 |
Structure conservation index | 0.93 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.794704 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2460451 115 - 27905053 CAAGAGCGAAGUGGAACAACUGACCGAAUCUGAAUUUGGAUCACAAAAAAUGAAUGCUGUGCAUUGUGGGGCACUGAAAGUGCUGCAGGGCACAGGGUUGAGUUCUUUCCCUGCU ....((((....(((((...(((((((((....)))))).))).......(.(((.((((((....((.(((((.....))))).))..)))))).))).)))))).....)))) ( -36.30) >DroSec_CAF1 19423 115 - 1 CAAGAGCGAAGUGGAACAACUGACCGAAUCUGAAUUUGGAUCACAAAAAAUGAAUGCUGUGCAUUGUGGGGCACUGAAAGUGCCGCAGGGCACAUGGUUGCAUUUUAUCCCUGCU ....(((..((.(((.....(((((((((....)))))).)))...((((((...((((((..((.((.(((((.....))))).)).))..))))))..)))))).)))))))) ( -34.20) >DroSim_CAF1 16152 115 - 1 CAAGAGCGAAGUGGAACAACUGACCGAAUCCGAAUUUAGAUCACAAAAAAUGAAUGCUGUGCAUUGUGGGGCACUGAAAGUGCCGCAGGGCACAGGGUUGCAUUUUAUCCCUGCU ....(((..((.(((....((((.((....))...)))).......(((((((((.((((((....((.(((((.....))))).))..)))))).))).)))))).)))))))) ( -34.80) >DroEre_CAF1 20908 115 - 1 CAAGAGCGAAGUGGAACGACUGACCGAGUCCGAAUUUGGAUCACAAAAAAUGAAUGCUGUGCAUUGUGGAGCACUGAAAGUGCCGCAGGGCACAGGGUUGCAUUUUAUCCCUGCU ....(((..((.(((.....(((((((((....)))))).)))...(((((((((.((((((.(((((..((((.....))))))))).)))))).))).)))))).)))))))) ( -37.70) >consensus CAAGAGCGAAGUGGAACAACUGACCGAAUCCGAAUUUGGAUCACAAAAAAUGAAUGCUGUGCAUUGUGGGGCACUGAAAGUGCCGCAGGGCACAGGGUUGCAUUUUAUCCCUGCU ....(((..((.(((.....(((((((((....)))))).)))...(((((((((.((((((.((((((.((.......)).)))))).)))))).))).)))))).)))))))) (-33.36 = -33.80 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:19 2006