| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,119,833 – 18,119,941 |
| Length | 108 |
| Max. P | 0.984175 |
| Location | 18,119,833 – 18,119,941 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.59 |
| Mean single sequence MFE | -39.38 |
| Consensus MFE | -20.03 |
| Energy contribution | -21.57 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.51 |
| SVM decision value | 1.97 |
| SVM RNA-class probability | 0.984175 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18119833 108 + 27905053 ---------GGCGUAUCUUCCUCC---AUGGCCAGCAACCUGCCACUCAACCGGAAUCUGGUAAUGCUGCGCAAUCAUCUGCGCAAGAAUACGGGCGGUAGCAUUACCGGAAAUGGCGGC ---------(((.(((........---))))))......((((((.((.....)).(((((((((((((((((......)))((..(....)..)).))))))))))))))..)))))). ( -38.30) >DroGri_CAF1 167056 92 + 1 ---------AAU----C--CGCUGGGUCUGUCCAGCAAUCUGCCACUGAAUCGCAAUCUGGUGAUGUUGCGCAAUCAUUUGCGCAAAAAUACGAGUGGCAA---UG----------CGGC ---------...----(--(((((((....))))))....(((((((..(((((......))))).((((((((....)))))))).......))))))).---..----------.)). ( -37.10) >DroSec_CAF1 150504 108 + 1 ---------GGCCUAUCUUCCUCC---AUGGCCAGCAACCUGCCACUCAACCGGAAUCUGGUAAUGCUACGCAAUCACCUGCGCAAGAAUACGGGCGGUAGCAUUACCGGAAAUGGCGGC ---------((((...........---..))))......((((((.((.....)).(((((((((((((((((......)))((..(....)..)).))))))))))))))..)))))). ( -41.92) >DroSim_CAF1 155335 108 + 1 ---------GGCCUAUCUUCCUCC---AUGGCCAGCAACCUGCCACUCAACCGGAAUCUGGUAAUGCUACGCAAUCAUCUGCGCAAGAAUACGGGCGGUAGCAUUACCGGAAAUGGCGGC ---------((((...........---..))))......((((((.((.....)).(((((((((((((((((......)))((..(....)..)).))))))))))))))..)))))). ( -41.92) >DroWil_CAF1 163680 112 + 1 ---ACC---GGCGGCUCUUCGUUGGGGCUGUGCAACAAUUUGCCCCUUAAUCGAAAUCUGGUCAUGCUGCGAAAUCAUUUGCGCAAGAAUACAAGCAACAACAAUGCUGGACAAGGA--C ---.((---(((((((.((((..(((((.((......))..))))).....))))....)))).(((.(((((....))))))))....................))))).......--. ( -30.80) >DroYak_CAF1 158892 117 + 1 GGCAACGGCGGCCUAUCUUCCUCC---AUGGCCAGCAACCUGCCACUGAACCGGAAUCUGGUAAUGCUGCGCAAUCAUCUGCGCAAGAAUACGGGCGGUAGCAUUACCGGAAAUGGCGGC ((((...((((((...........---..)))).))....)))).(((..(((...(((((((((((((((((......)))((..(....)..)).))))))))))))))..)))))). ( -46.22) >consensus _________GGCCUAUCUUCCUCC___AUGGCCAGCAACCUGCCACUCAACCGGAAUCUGGUAAUGCUGCGCAAUCAUCUGCGCAAGAAUACGGGCGGUAGCAUUACCGGAAAUGGCGGC .......................................(((((..((.....)).(((((((((((((((((......)))((..........)).))))))))))))))...))))). (-20.03 = -21.57 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:27 2006