| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,116,915 – 18,117,035 |
| Length | 120 |
| Max. P | 0.783860 |
| Location | 18,116,915 – 18,117,035 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.94 |
| Mean single sequence MFE | -33.38 |
| Consensus MFE | -29.98 |
| Energy contribution | -29.57 |
| Covariance contribution | -0.42 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.783860 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18116915 120 - 27905053 GAACAGGCGAACGCCUGAUCGCUCAUGCUGCCACGGUCGGUAUUAUCUUGGGAAUUGCUGAAAUCCCUCGACGUAUCCUUUGUGGCAACAAAGUUUCGUCCAUUCUCAUUAAAUGCGCCA ((.(((((....))))).))(((..((.((((((((..(((((..((..((((.((....)).))))..)).)))))..)))))))).)).)))...((.((((.......)))).)).. ( -33.80) >DroVir_CAF1 163256 120 - 1 GAACAUGCAAACGCCUGAUCGCUCAUGCUGCCACGGUCGGUAUUAUCUUGGGAAUUGCUGAAAUCCCUUGAUGUAUCCUUUGUGGCAACAAAGUUUCGUCCAUUCUCAUUAAAUGCGCCA (((...((((((((.(((....))).))((((((((..(((((.(((..((((.((....)).))))..))))))))..)))))))).....)))).))...)))............... ( -30.50) >DroPse_CAF1 150207 120 - 1 GAACAGGCAAACGCCUGAUCGCUCAUGCUGCCACGGUCGGUAUUGUCUUGGGAGUUGCUGAAAUCCCUCGACGUAUCCUUUGUGGCAACAAAGUUCCUUCCAUUCUCAUUAAAAGUGCCA ((.(((((....))))).))(((..((.((((((((..(((((.(((..((((..........))))..))))))))..)))))))).)).))).......................... ( -36.50) >DroGri_CAF1 164255 120 - 1 GAACAUGCAAACGCCUGAUCGCUCAUGCUGCCACGGUCGGUAUUAUCUUGGGAAUUGCUGAAAUCCCUUGAUGUAUCCUUUGUGGCAACAAAGUUCCGUCCAUUCUCAUUAAAUGCGCCA ((((........((.(((....))).))((((((((..(((((.(((..((((.((....)).))))..))))))))..)))))))).....)))).((.((((.......)))).)).. ( -31.80) >DroWil_CAF1 160986 120 - 1 GAACAUGCAAACGCCUGAUCACUCAUGCUGCCACGGUCGGUAUUAUCUUGGGAAUUGCUAAAAUCCCUUGAUGUAUCCUUUGUGGCAACAAAGUUUCGUCCAUUCUCAUUAAAUGCGCCA (((...((((((((.(((....))).))((((((((..(((((.(((..((((.((....)).))))..))))))))..)))))))).....)))).))...)))............... ( -31.20) >DroPer_CAF1 175855 120 - 1 GAACAGGCAAACGCCUGAUCGCUCAUGCUGCCACGGUCGGUAUUGUCUUGGGAGUUGCUGAAAUCCCUCGACGUAUCCUUUGUGGCAACAAAGUUCCUUCCAUUCUCAUUAAAAGUGCCA ((.(((((....))))).))(((..((.((((((((..(((((.(((..((((..........))))..))))))))..)))))))).)).))).......................... ( -36.50) >consensus GAACAGGCAAACGCCUGAUCGCUCAUGCUGCCACGGUCGGUAUUAUCUUGGGAAUUGCUGAAAUCCCUCGACGUAUCCUUUGUGGCAACAAAGUUCCGUCCAUUCUCAUUAAAUGCGCCA ((((........((.(((....))).))((((((((..(((((.(((..((((.((....)).))))..))))))))..)))))))).....))))........................ (-29.98 = -29.57 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:23 2006