| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,109,845 – 18,109,947 |
| Length | 102 |
| Max. P | 0.805699 |
| Location | 18,109,845 – 18,109,947 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.92 |
| Mean single sequence MFE | -26.87 |
| Consensus MFE | -14.93 |
| Energy contribution | -16.82 |
| Covariance contribution | 1.89 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.805699 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18109845 102 + 27905053 AAGUGUGUCUCUAUUUCGGCCG----------UUGCUGUUUGUUUGGCGGCCCUGGCAUGCUUUUCGCUUUCCAGUUCGGCAGCAGAAGCAUUUUC---AUAC----AUACUACUG-GUA .(((((((..........((((----------..((((((.....))))))..))))((((((((.(((..((.....)).)))))))))))....---..))----)))))....-... ( -31.20) >DroPse_CAF1 144838 85 + 1 A--CUUUUUUCUAUU---GCCA----------UUUCUGUUU-----ACGGCCCUGGCAUGCUUUCUGCUCUCCGCC----------CAGCAUUCUCCAUAUAC----AUAUUACCGAGU- (--(((........(---((((----------...(((...-----.)))...)))))((((....((.....)).----------.))))............----........))))- ( -12.20) >DroSec_CAF1 140716 101 + 1 AAGUGUGUCUCUAUUUUGGCCG----------UUGCUGUUUGUUUGGCGGCCCUGGCAUGCUUUUCGCUUUCCGUUUCGGCAGCAAAAGCAUUUUC---UUAC----AUACUACUG-GU- .(((((((..........((((----------..((((((.....))))))..))))((((((((.(((..(((...))).)))))))))))....---..))----)))))....-..- ( -31.90) >DroSim_CAF1 145446 101 + 1 AAGUGUGUCUCUAUUUCGGCCA----------UUGCUGUUUGUUUGGCGGCCCUGGCAUGCUUUUCGCUUUCCGUUUCGGCAGCAGAAGCAUUUUC---AUAC----AUACUACUG-GU- .(((((((..........((((----------..((((((.....))))))..))))((((((((.(((..(((...))).)))))))))))....---..))----)))))....-..- ( -32.70) >DroEre_CAF1 150662 102 + 1 AAGUGUGUCUCUAUUUUUGCCG----------UUACUGUUUGUUUGGCGGCCCUGGCAUGCUUUUCGCUUUCCCGUUCGGCAGCAAAAGCAUUUUC---AUAC----AUACUACUC-GUA .(((((((.........(((((----------...(((((.....)))))...)))))(((((((.(((...((....)).)))))))))).....---..))----)))))....-... ( -27.00) >DroYak_CAF1 148571 116 + 1 AAGUGUGUCUCUAUGUUCGCUAUUUUCAUCGUUUGCUGUUUGUUUGACGGCCCUGGCAUGCUUUUCGCUUUCCGGUUCGGCAGCAGAAGCAUUUUC---AUAUAUAUAUACAACUC-GUA ..((((((.(.((((...............(((.((((((.....))))))...)))((((((((.(((..(((...))).)))))))))))...)---))).).)))))).....-... ( -26.20) >consensus AAGUGUGUCUCUAUUUUGGCCA__________UUGCUGUUUGUUUGGCGGCCCUGGCAUGCUUUUCGCUUUCCGGUUCGGCAGCAGAAGCAUUUUC___AUAC____AUACUACUG_GU_ .(((((............((((............((((((.....))))))..))))((((((((.(((..((.....)).)))))))))))...............)))))........ (-14.93 = -16.82 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:16 2006