Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 18,109,089 – 18,109,180 |
Length | 91 |
Max. P | 0.973934 |
Location | 18,109,089 – 18,109,180 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 91.05 |
Mean single sequence MFE | -20.28 |
Consensus MFE | -17.00 |
Energy contribution | -16.84 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.43 |
Structure conservation index | 0.84 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.726273 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18109089 91 + 27905053 UAGUUAUCAAACGCUUUUUUUUUCGCAGUGAACUCACGCAAAUUGCGUUGCUGCACGACAAUUUGUCGACUGUUUGCCAGUUCAGGAAAAU ..................((((((((((((.....((((.....)))))))))).((((.....))))((((.....))))...)))))). ( -20.30) >DroSec_CAF1 139964 90 + 1 UAGUUAUCAAACUAUU-UUUUUUCUCAGUGAACUCACGCAAAUUGCGUUGCUGCACGACAAUUUGUCGACUGUUUGCCAGUCCAGGAAAAU (((((....)))))..-.(((((((..(((....)))(((((((((((......))).)))))))).(((((.....))))).))))))). ( -21.60) >DroSim_CAF1 144695 91 + 1 AAGUUAUCAAACGCUUUUUUUUUCUCAGUGAACUCACGCAAAUUGCGUUGCUGCACGACAAUUUGUCGACUGUUUGCCAGUCCAGGAAAAU ..................(((((((..(((....)))(((((((((((......))).)))))))).(((((.....))))).))))))). ( -20.10) >DroEre_CAF1 149933 88 + 1 UUAUUAUCGUAUGUUU---UUUUCUCAGUGAACUCACGCAAAUUGCGUUGCUGCACGACAAUUUGUCGACUGUUUGCCAGUCCAGCAAAAU ................---........(((....)))((.....)).((((((...(((.....)))(((((.....)))))))))))... ( -19.60) >DroYak_CAF1 147785 88 + 1 UAGUAAUCAAAAGCUU---UUUUUCCAGUGAACUCACGCAAAUUGCGUUGCUGCACGACAAUUUGUCGACUGUUUGCCAGUCCAGCAAAAU ............((..---(((.....(((....)))..)))..)).((((((...(((.....)))(((((.....)))))))))))... ( -19.80) >consensus UAGUUAUCAAACGCUU_UUUUUUCUCAGUGAACUCACGCAAAUUGCGUUGCUGCACGACAAUUUGUCGACUGUUUGCCAGUCCAGGAAAAU ...........................(((....)))(((((((((((......))).)))))))).(((((.....)))))......... (-17.00 = -16.84 + -0.16)
Location | 18,109,089 – 18,109,180 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 91.05 |
Mean single sequence MFE | -22.28 |
Consensus MFE | -19.48 |
Energy contribution | -19.24 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.14 |
Mean z-score | -1.79 |
Structure conservation index | 0.87 |
SVM decision value | 1.72 |
SVM RNA-class probability | 0.973934 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18109089 91 - 27905053 AUUUUCCUGAACUGGCAAACAGUCGACAAAUUGUCGUGCAGCAACGCAAUUUGCGUGAGUUCACUGCGAAAAAAAAAGCGUUUGAUAACUA .((((((((((((.((.....((((((.....)))).)).((((......)))))).))))))..).)))))................... ( -20.30) >DroSec_CAF1 139964 90 - 1 AUUUUCCUGGACUGGCAAACAGUCGACAAAUUGUCGUGCAGCAACGCAAUUUGCGUGAGUUCACUGAGAAAAAA-AAUAGUUUGAUAACUA .(((((...(((((.....)))))(((.....)))(((.(((.((((.....))))..))))))...)))))..-..(((((....))))) ( -23.20) >DroSim_CAF1 144695 91 - 1 AUUUUCCUGGACUGGCAAACAGUCGACAAAUUGUCGUGCAGCAACGCAAUUUGCGUGAGUUCACUGAGAAAAAAAAAGCGUUUGAUAACUU .(((((...(((((.....)))))(((.....)))(((.(((.((((.....))))..))))))...)))))................... ( -21.70) >DroEre_CAF1 149933 88 - 1 AUUUUGCUGGACUGGCAAACAGUCGACAAAUUGUCGUGCAGCAACGCAAUUUGCGUGAGUUCACUGAGAAAA---AAACAUACGAUAAUAA ...(((.(.(((((.....))))).))))(((((((((..((((......))))(((....)))........---.....))))))))).. ( -22.50) >DroYak_CAF1 147785 88 - 1 AUUUUGCUGGACUGGCAAACAGUCGACAAAUUGUCGUGCAGCAACGCAAUUUGCGUGAGUUCACUGGAAAAA---AAGCUUUUGAUUACUA ....((((((((((.....)))))(((.....)))...)))))((((.....)))).((((((..((.....---...))..)))..))). ( -23.70) >consensus AUUUUCCUGGACUGGCAAACAGUCGACAAAUUGUCGUGCAGCAACGCAAUUUGCGUGAGUUCACUGAGAAAAAA_AAGCGUUUGAUAACUA .((((..((((((.((.....((((((.....)))).)).((((......)))))).))))))..))))...................... (-19.48 = -19.24 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:15 2006