Locus 684

Sequence ID 3R_DroMel_CAF1
Location 2,459,211 – 2,459,317
Length 106
Max. P 0.923598
window1085

overview

Window 5

Location 2,459,211 – 2,459,317
Length 106
Sequences 4
Columns 106
Reading direction reverse
Mean pairwise identity 98.58
Mean single sequence MFE -30.68
Consensus MFE -29.17
Energy contribution -29.43
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.60
Structure conservation index 0.95
SVM decision value 1.16
SVM RNA-class probability 0.923598
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2459211 106 - 27905053
AUUUGCACCGACUCGUGCUCGUUAACAAAGGAUACAUAUGUAUCUCUUAGAUAUUUGGCUUUUGUGCUCCGUGCGCGCAAUGUGCUCGGAGUUUUUCUUAUUCCCC
....((((......))))......(((((((...((...(((((.....))))).)).)))))))((((((.((((.....)))).)))))).............. ( -30.50)
>DroSec_CAF1 18207 106 - 1
AUUUGCACCGACUCGUGCUCGUUAACAAAGGAUACAUAUGUAUCUCUUAGAUAUUUGGCUUUUGUGCUCCGUGCGCGCAAUGUGCUCGGAGUUUUUCUUAUUCCCC
....((((......))))......(((((((...((...(((((.....))))).)).)))))))((((((.((((.....)))).)))))).............. ( -30.50)
>DroSim_CAF1 14932 106 - 1
AUUUGCACCGACUCGUGCUCGUUAACAAAGGAUACAUAUGUAUCUCUUAGAUAUUUGGCUUUUGUGCUCCGUGCGCGCAAUGUGCUCGGAGUUUUUCUUAUUCCCC
....((((......))))......(((((((...((...(((((.....))))).)).)))))))((((((.((((.....)))).)))))).............. ( -30.50)
>DroEre_CAF1 19727 106 - 1
AUUUGCUCCGACUCGUGCUCGUUAACAAAGGAUACAUAUGUAUCUCUUAGAUAUUUGGCUUUUGUGCUCCGUGCGCGCAGUGUGCUCGGAGUUUUUCUUAUUCCCU
....((((((((((((((.((...(((((((...((...(((((.....))))).)).)))))))....)).))))).)).....))))))).............. ( -31.20)
>consensus
AUUUGCACCGACUCGUGCUCGUUAACAAAGGAUACAUAUGUAUCUCUUAGAUAUUUGGCUUUUGUGCUCCGUGCGCGCAAUGUGCUCGGAGUUUUUCUUAUUCCCC
....((((......))))......(((((((...((...(((((.....))))).)).)))))))((((((.((((.....)))).)))))).............. (-29.17 = -29.43 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:18 2006