Locus 6839

Sequence ID 3R_DroMel_CAF1
Location 18,106,778 – 18,106,879
Length 101
Max. P 0.727146
window11099

overview

Window 9

Location 18,106,778 – 18,106,879
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 88.55
Mean single sequence MFE -26.02
Consensus MFE -19.42
Energy contribution -19.42
Covariance contribution -0.00
Combinations/Pair 1.20
Mean z-score -1.83
Structure conservation index 0.75
SVM decision value 0.41
SVM RNA-class probability 0.727146
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18106778 101 + 27905053
AAAUCUCCUACCAUAUUUCUAUACUUUGCUUAAAAAUGCGUGUGCGAUGUGGGAUGUUUGGUUGCUUCGACUGGAAUAGUGGCAUAAAUAUUUAUGCUGCA
..........(((((((..(((((...((........))))))).)))))))....((..((((...))))..))...(..((((((....))))))..). ( -25.10)
>DroSec_CAF1 137653 96 + 1
AAAUCUCCUGCCAUAUUUCUAUAGUUCGCUUAAAAAUGCGUGUGCUA-GUGGGAUGUUUGGUUGCUUAGACUGU----GUGGCAUAAAUAUUUAUGCUGCA
...(((...((((.((.(((.((((.(((........)))...))))-...))).)).)))).....)))...(----(..((((((....))))))..)) ( -25.30)
>DroSim_CAF1 142384 100 + 1
AAAUCUCCUGCUAUAUUUCUAUAGUUCGCUUAAAAAUGCGUCUGCUA-GUGGGAUGUUUGGUUGCUUAGACUGGAAUAGUGGCAUAAAUAUUUAUGCUGCA
.....(((..((((((....)))((.(((........)))...))))-)..)))..((..(((.....)))..))...(..((((((....))))))..). ( -25.40)
>DroEre_CAF1 142371 100 + 1
AAAUCAACUGCCACAUAUCCUUAGUUGGCUUAAAAAUGCGUGUGCUA-GUGGGAUGUUUGGUUGCUUAGAACGGGAUAGUGGCAUAAAUAUUUAUGCUGCA
.........((((.(((((((((((..((........))....))))-..))))))).))))................(..((((((....))))))..). ( -26.00)
>DroYak_CAF1 145389 100 + 1
AAAUCUCCAGUCAUAUUUCUUUAGUUUGCUUAAAAAUGCGUAUGCUA-GUGGGAUGUUUGCUUGCUUAGAAUGGGAUAGUGGCAUAAAUAUUUAUGCCGCA
..(((.(((.((((((..(.(((((.(((........)))...))))-).)..))))..(....)...)).)))))).(((((((((....))))))))). ( -28.30)
>consensus
AAAUCUCCUGCCAUAUUUCUAUAGUUCGCUUAAAAAUGCGUGUGCUA_GUGGGAUGUUUGGUUGCUUAGACUGGAAUAGUGGCAUAAAUAUUUAUGCUGCA
.........((((.((.(((.((((.(((........)))...))))....))).)).))))................(((((((((....))))))))). (-19.42 = -19.42 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:12 2006