| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,106,013 – 18,106,118 |
| Length | 105 |
| Max. P | 0.607470 |
| Location | 18,106,013 – 18,106,118 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 80.05 |
| Mean single sequence MFE | -30.30 |
| Consensus MFE | -18.59 |
| Energy contribution | -18.62 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.607470 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18106013 105 - 27905053 UGGCCACGUGGAGUG-CUGUUUAAUUAUAUUUUGAAAGGCCAGGCCAU----------GGCU--GUUGAGUAGGAUGCCGCUACUUAGGCACAUAUCCUUAGUCAUUUCCUGCGCUUA .(((.((.....)))-))..................((((((((..((----------((((--(..((....(.((((........)))))...))..)))))))..)))).)))). ( -29.00) >DroVir_CAF1 151051 102 - 1 UGGCCAGGUG-AGUG-CUGUUUAAUUAUAUUUUGAAAGGCAAUUUUUU--AUA--------U--GUGG--GAGGAUGCUGCUACUUAGGCGCAUAUCCUUAGUCAUUUCCUGCGCUUA .(((((((.(-((((-(((......(((((...(((((....))))).--..)--------)--)))(--((..((((.(((.....))))))).))).))).))))))))).))).. ( -26.40) >DroGri_CAF1 151231 114 - 1 CGGCCAGGUG-AGUG-CUGUUUAAUUAUAUUUUGAAAGGCGACUGGGUGAGUAGGUGGGGGU--GUGGAUGAGGAUGCUGCUACUUAGGCGCAUAUCCUUAGUCAUUUCCUGCGCUUA ((.((((...-..((-((.(((((.......))))).)))).)))).))..((((((.(((.--(((..(((((((((.(((.....))))))..))))))..)))..))).)))))) ( -39.40) >DroWil_CAF1 149085 107 - 1 GAGCCAGGUG-AGUGGCUGUUUAAUUAUAUUUUGAAAGGCCAUGCCAU----------AGACGAGCUGGCAAGGAUGCUGCUACUUAGGCACAUAUCCUUAGUCAUUUCCUGCGCUUA ((((((((.(-(((((((....................((((.(((..----------....).))))))(((((((.((((.....))))..))))))))))))))))))).)))). ( -36.90) >DroMoj_CAF1 166081 100 - 1 UGGCCAGGUG-AGUG-CUGUUUAAUUAUAUUUUGAAAGGCAGCUUUUU----G--------U--GUGG--AAGGAUGCUGCUACUUAGGCGCAUAUCCUUAGUCAUUUCCUGCGCUUA .(((((((.(-((((-((......((((((...(((((....))))).----)--------)--))))--((((((((.(((.....))))))..))))))).))))))))).))).. ( -27.10) >DroAna_CAF1 132962 87 - 1 -GGCCAGGUG-AGUG-CUGUUUAAUUAUAUUUUGAAAGA----------------------------AAGUAGGAUGCUGCUACUUAGGCACAUAUCCUUAGUCAUUUCCUGCGCUUA -(((((((.(-((((-(((..........((((....))----------------------------))..((((((.((((.....))))..))))))))).))))))))).))).. ( -23.00) >consensus UGGCCAGGUG_AGUG_CUGUUUAAUUAUAUUUUGAAAGGCAACUCCAU_____________U__GUGGA_AAGGAUGCUGCUACUUAGGCACAUAUCCUUAGUCAUUUCCUGCGCUUA .(((((((...((((.((((((((.......)))))...................................((((((.((((.....))))..))))))))).)))).)))).))).. (-18.59 = -18.62 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:11 2006