| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,100,703 – 18,100,794 |
| Length | 91 |
| Max. P | 0.500000 |
| Location | 18,100,703 – 18,100,794 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 78.37 |
| Mean single sequence MFE | -17.31 |
| Consensus MFE | -9.44 |
| Energy contribution | -9.22 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.55 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18100703 91 - 27905053 CC---------------------GAC--GAGGGCA-AAGCAAGCAAAAUAACUGUCGCAAUAAAAUAAUUUAUUGAAGUUUUGCAAUGCCAGCGACAAAUGCAAUAAACU-GCGAA ..---------------------..(--(..((((-..((((.......((((....(((((((....))))))).))))))))..))))..)).....((((......)-))).. ( -20.21) >DroVir_CAF1 145957 101 - 1 AA--AA-CU--------AUG---AACAACAUCUCGCAGAGAAGCAAAAUAACUGUCGCAAUAAAAUAAUUUAUUGAAGUUUUGCAAUGCCAGCGACAAAUGCAAUAAAGU-GCAAA ..--..-..--------...---.........((((......(((((...(((....(((((((....))))))).)))))))).......))))....((((......)-))).. ( -15.62) >DroGri_CAF1 146047 96 - 1 GA--AA-A---------------CACAACAUAAAA-AAGCAAGCAAAAUAACUGUCGCAAUAAAAUAAUUUAUUGAAGUUUUGCAAUGCCAGCGACAAAUGCAAUAAACU-GCAAA ..--..-.---------------............-..(((.(((((...(((....(((((((....))))))).))))))))..)))..........((((......)-))).. ( -14.10) >DroWil_CAF1 143761 103 - 1 CA-----GCC-----AGAAGAAUAAC--AAGAGCA-AAGCAAGCAAAAUAACUGUCGCAAUAAAAUAAUUUAUUGAAGUUUUGCAAUGCCAGCGACAAAUGCAAUAAACUUGUGAA ..-----...-----.........((--(((.(((-((((..(((.......)))..(((((((....)))))))..))))))).......(((.....)))......)))))... ( -17.60) >DroMoj_CAF1 161264 96 - 1 --------G--------UUC---AACAACAUCUUCUGGGGAAGCAAAAUAACUGUCGCAAUAAAAUAAUUUAUUGAAGUUCUGCAAUGCCAGCGACAAAUGCAAUAAACU-GCAAA --------.--------...---...........((((.(..(((....((((....(((((((....))))))).)))).)))..).)))).......((((......)-))).. ( -16.40) >DroAna_CAF1 128032 110 - 1 UCGGAAACCCAGUGCAGAG----GACGAGAGAGCA-AAGCAAGCAAAAUAACUGUCGCAAUAAAAUAAUUUAUUGAAGUUUUGCAAUGCCAACGACAAAUGCAAUAAACU-GCGAA ..((....))..(((((..----.........(((-((((..(((.......)))..(((((((....)))))))..)))))))..(((...........))).....))-))).. ( -19.90) >consensus CA_______________A_____AACAACAGAGCA_AAGCAAGCAAAAUAACUGUCGCAAUAAAAUAAUUUAUUGAAGUUUUGCAAUGCCAGCGACAAAUGCAAUAAACU_GCAAA ..........................................((((...((((....(((((((....))))))).))))))))...............(((.........))).. ( -9.44 = -9.22 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:08 2006