Locus 6834

Sequence ID 3R_DroMel_CAF1
Location 18,082,317 – 18,082,408
Length 91
Max. P 0.528950
window11092

overview

Window 2

Location 18,082,317 – 18,082,408
Length 91
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 80.82
Mean single sequence MFE -26.95
Consensus MFE -16.57
Energy contribution -16.85
Covariance contribution 0.28
Combinations/Pair 1.14
Mean z-score -1.58
Structure conservation index 0.61
SVM decision value -0.01
SVM RNA-class probability 0.528950
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18082317 91 + 27905053
ACUGCUGGCAGGACAAGCAGCUUCCGAUGUCGUCCUGCAGCCUC---CGUUCAUCCUGCUUUGUCAUUUGUUUGGCCUGCAGCUAAAUUUGCCU
...((((.((((((..(((........))).))))))))))...---........((((...((((......))))..))))............ ( -25.60)
>DroVir_CAF1 127610 83 + 1
ACGGCUGCCAGGACAAGCAGCUUCCGAUGCCGAC-----GCCGU---CG---UCGACGCUUUGUCAUUUGCUUAGCCUGCAGCUAAAUUUGCCU
..((((((.(((..((((((.(..(((.((((((-----(....---))---)))..)).)))..).))))))..))))))))).......... ( -29.60)
>DroGri_CAF1 126547 77 + 1
ACGGCUGCCAGAACAAGCAGCUUCCGAUGCCGAC-----GACGC---CG---------UUUUGUCAUUUGUUUAGCCUGCAGCUAAACUCGCUU
..((((((........))))))..(((....(((-----((...---..---------..)))))....(((((((.....))))))))))... ( -20.50)
>DroEre_CAF1 117742 94 + 1
ACUGCUGGCAGGACAAGCAGCUUCCGAUGUCGUCCUGCAGCCUCUGCCGUUCAUCCUGCUUUGUCAUUUGUUUGGCCUGCAGCUAAAUUUGCCU
......((((((((((((((.....((((.((....((((...))))))..)))))))).)))))....(((((((.....)))))))))))). ( -27.70)
>DroYak_CAF1 118862 91 + 1
ACUGCUGGCAGGACAAGCAGCUUCCGAUGUCGUCCUGCAGCCUC---CGUUCAUCCUGCUUUGUCAUUUGUUUGGCCUGCAGCUAAAUUUGCCU
...((((.((((((..(((........))).))))))))))...---........((((...((((......))))..))))............ ( -25.60)
>DroAna_CAF1 110938 87 + 1
GCUGCUGGCAGGACAAGCAGCUUCCGAUGUCCU---G-AGCUGC---CUUCUCUGGCGCUUUGUCAUUUGUUUGGCCUGCAGCUAAAUUUGCCU
(((((.(((..((((((((((((..(....)..---)-))))))---......((((.....)))).)))))..))).)))))........... ( -32.70)
>consensus
ACUGCUGGCAGGACAAGCAGCUUCCGAUGUCGUC__G_AGCCGC___CGUUCAUCCUGCUUUGUCAUUUGUUUGGCCUGCAGCUAAAUUUGCCU
...((((.((((.(((((((.(..(((.((...........................)).)))..).))))))).))))))))........... (-16.57 = -16.85 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:05 2006