| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,064,207 – 18,064,317 |
| Length | 110 |
| Max. P | 0.516468 |
| Location | 18,064,207 – 18,064,317 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.04 |
| Mean single sequence MFE | -23.56 |
| Consensus MFE | -15.12 |
| Energy contribution | -15.12 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.516468 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18064207 110 + 27905053 --CAGGCAAUUUUGAUGAAAAUUAUGACAAUAAUUGUCAUUAAAUCAAAAAUGCUCAGUAAUUGUCUCAUAAAUUUACUAUGCAAAUUGUGAGGCAGGGCCAUGAA--AAUCGA------ --...(((.(((((((.......((((((.....))))))...))))))).)))(((....(((((((((((.((........)).))))))))))).....))).--......------ ( -26.90) >DroVir_CAF1 118637 97 + 1 --CAGGCAAUUUU-AUGAAAAUUAUGACAAUAAUUGUCAUUAAAUCAAAAAUGCUCAGUAAUUGUCUCAUAAAUUUACUAUGCAAAUUGUGUGGCAGCAG-------------------- --...((...(((-((((.......((((((.((((.((((........))))..)))).)))))))))))))....((((((.....))))))..))..-------------------- ( -18.91) >DroWil_CAF1 115303 117 + 1 --CAGGCAAUUUU-AUGAAAAUUAUGACAAUAAUUGUCAUUAAAUCAAAAAUGCUCAGUAAUUGUCUCAUAAAUUUACUAUGCAAAUUGUGAGGCAUGGGCCGAAACGAAACGAACUCAA --..(((...(((-((((.......((((((.((((.((((........))))..)))).)))))))))))))....((((((..........))))))))).................. ( -24.81) >DroMoj_CAF1 129889 108 + 1 --CAGGCAAUUUU-AUGAAAAUUAUGACAAUAAUUGUCAUUAAAUCAAAAAUGCUCAGUAAUUGUCUCAUAAAUUUACUAUGCAAAUUGUGUGGUAGGCA--GACG--GACGGA-C---- --...((...(((-((((.......((((((.((((.((((........))))..)))).))))))))))))).(((((((((.....))))))))))).--....--......-.---- ( -22.41) >DroAna_CAF1 102068 110 + 1 --CAGGCAAUUUUGAUGAAAAUUAUGACAAUAAUUGUCAUUAAAUCAAAAAUGCUCAGUAAUUGUCUCAUAAAUUUACUAUGCAAAUUGUGAGGCAUGGCCAUAAG--GAUAUA------ --..((((.(((((((.......((((((.....))))))...))))))).))))..((...((((((((((.((........)).))))))))))..))......--......------ ( -25.90) >DroPer_CAF1 128850 99 + 1 UCUAGGCAAUUUUGAUGAAAAUUAUGACAAUAAUUGUCAUUAAAUCAAAAAUGCUCAGUAAUUGUCUCAUAAAUUUACUAUGCAAAUUGUUGGGGGCGU--------------------- .((..(((.(((((((.......((((((.....))))))...))))))).)))..)).....(((((...(((((.......)))))....)))))..--------------------- ( -22.40) >consensus __CAGGCAAUUUU_AUGAAAAUUAUGACAAUAAUUGUCAUUAAAUCAAAAAUGCUCAGUAAUUGUCUCAUAAAUUUACUAUGCAAAUUGUGAGGCAGGGC___AA____A__GA______ .....((((((....(((.....((((((.....))))))....)))....(((..(((((.............)))))..))))))))).............................. (-15.12 = -15.12 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:04 2006