Locus 6830

Sequence ID 3R_DroMel_CAF1
Location 18,058,034 – 18,058,133
Length 99
Max. P 0.557061
window11086

overview

Window 6

Location 18,058,034 – 18,058,133
Length 99
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 88.67
Mean single sequence MFE -24.23
Consensus MFE -17.00
Energy contribution -17.64
Covariance contribution 0.64
Combinations/Pair 1.05
Mean z-score -1.84
Structure conservation index 0.70
SVM decision value 0.05
SVM RNA-class probability 0.557061
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18058034 99 - 27905053
CAGCAGCUGAAGGCAUCGAUGAAAUGCAAGUUCCACCUACAUAACAAGAACUUGAACAGUGCGCUUCGGCAUUGUAAAGUUCAUAUCUCUUUCAACAAU-
.....(.((((((.....(((((...(((((((..............))))))).(((((((......)))))))....)))))....)))))).)...- ( -23.34)
>DroSec_CAF1 100187 97 - 1
CAGCAGCUGAAGGCAUCGAUGAAAUGCCAGUUCCACCUACAUAACAAGAACUUGAACAGUGCGCUUCGGCAUUGUAAAGUUCAUU---CAUUCAAAAAAA
.......(((((((((.......)))))...................((((((..(((((((......))))))).))))))...---..))))...... ( -23.80)
>DroSim_CAF1 103037 100 - 1
CAGCAGCUGAAGGCAUCGAUGAAAUGCCAGUUCCACCUACAUAACAAGAACUUGAACAGUGCGCUUCGGCAUUGUAAAGUUCAUUUCUCUUUCAAAAAAA
.......(((((((((.......)))))...................((((((..(((((((......))))))).))))))........))))...... ( -23.70)
>DroEre_CAF1 103681 99 - 1
CAGCAGCUGAAGGCAUCGAUGAAAUGCAAGUUCCACCUCCAUAACAAGAAGUUGAACAGUGCGCUUCAGCAUUGUAAAGUUAGUAUCUCCUUUUACAAG-
.....(((((((((((...((.....)).((((.((.((........)).)).)))).)))).))))))).((((((((..((...))..)))))))).- ( -23.90)
>DroYak_CAF1 104644 99 - 1
CAGCAGCUGAAGGCAUCGAUGAAAUGCAAGUUCCACCUACAUAACAAGAAGUUGGACAGUGCGCUUCGGCAUUGUAAGGCGUAUAUAUGCUUUCACAAG-
.....(((((((((((.(.((.....))...((((.((.(.......).)).))))).)))).))))))).(((((((((((....))))))).)))).- ( -26.40)
>consensus
CAGCAGCUGAAGGCAUCGAUGAAAUGCAAGUUCCACCUACAUAACAAGAACUUGAACAGUGCGCUUCGGCAUUGUAAAGUUCAUAUCUCCUUCAACAAA_
.....(((((((((((...((.....(((((((..............)))))))..)))))).))))))).............................. (-17.00 = -17.64 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:59 2006