| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,050,154 – 18,050,252 |
| Length | 98 |
| Max. P | 0.992963 |
| Location | 18,050,154 – 18,050,252 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 78.90 |
| Mean single sequence MFE | -31.03 |
| Consensus MFE | -16.75 |
| Energy contribution | -16.99 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.82 |
| Structure conservation index | 0.54 |
| SVM decision value | 2.36 |
| SVM RNA-class probability | 0.992963 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18050154 98 + 27905053 GUAUAGGUGUAUGUCUAUACAUA--UAUACAUGCUUAAGCUA----------UGUUUGUGUGAGAGUUGGGGCUGUUGUCCUUGGCUGUGACUCUUGGGCAUGUGCAUGU ......(..((((((((..((((--((.((((((....)).)----------))).))))))(((((((.(((((.......))))).)))))))))))))))..).... ( -35.10) >DroSec_CAF1 92516 97 + 1 GUAUUGGUG---GUACAUACAUACAUAUACAUGCUUAAGGUG----------UGUUUGUGUGAGAGUUGGGGCUGUUGUCCUUGGAUGUGACUCUUGGGCAUGUGCAUGU .........---((((((.((((((...((((((.....)))----------))).))))))(((((((((((....))))).......)))))).....)))))).... ( -28.61) >DroSim_CAF1 94496 95 + 1 GUAUAGGUG---GUGCAUACAUA--UAUACAUGCUUAAGGUA----------CGUUUGUGUGAGAGUUGGGGCUGUUGUCCUUGGAUGUGACUCUUGGGCAUGUGCAUGU ((((.....---))))....(((--(.(((((((((((((((----------(((..(..........(((((....))))))..)))).)).)))))))))))).)))) ( -27.40) >DroEre_CAF1 95748 82 + 1 GGAUGGGUACA--U--------------ACAUACCUAGGGUA------------UGUGUGUGCGAGUUGGGGCUGUUGUCCUUGGAUGUGACUCUUGGGCAUGUGCAUGU .(((..(((((--(--------------(((((((...))))------------)))))))))..)))(((((....)))))((.(((((.((....))))))).))... ( -30.70) >DroYak_CAF1 96728 106 + 1 GGAUAGCUACA--UAUAUAUGUA--UGUACAUACUUAAGGUACAUACCUAUGUGCAUGUGUGCGAGUUGGGGCUGUUGUCCUUGGAUGUGACUCUUGGGCAUGUGCAUGU ........(((--((((((.(((--(((((.........)))))))).)))))((((((((.((((..(((((....)))))...........)))).)))))))))))) ( -33.32) >consensus GUAUAGGUG_A_GUACAUACAUA__UAUACAUGCUUAAGGUA__________UGUUUGUGUGAGAGUUGGGGCUGUUGUCCUUGGAUGUGACUCUUGGGCAUGUGCAUGU ...........................(((((((((((.................((....))((((((((((....))))).......))))))))))))))))..... (-16.75 = -16.99 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:57 2006