| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,047,642 – 18,047,739 |
| Length | 97 |
| Max. P | 0.807744 |
| Location | 18,047,642 – 18,047,739 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 93.74 |
| Mean single sequence MFE | -22.06 |
| Consensus MFE | -18.04 |
| Energy contribution | -18.16 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.807744 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18047642 97 - 27905053 -GAAAUAACUAUAGCGAAAAUUCAUAAUCGAGCCAAGAGGCGGCGGCGCAAAUGCAAAUGCUAAUGUUAUGCCAGUCCAGACAGUGGCAAAAGUUAUC -...((((((.(((((...........(((.(((....)))..))).((....))...)))))......(((((.(......).)))))..)))))). ( -22.80) >DroSec_CAF1 90023 97 - 1 -GAAAUAACUAUAGCAAAAAUUCAUAAUCGAGCCAAGAGGCGGCGGCGCAAAUGCAAAUGCAAAUGUUAUGCCAGUCCAGACAGUGGCAAAAGUUAUC -...((((((((((((...............(((....))).(((..((....))...)))...))))))((((.(......).))))...)))))). ( -21.70) >DroSim_CAF1 91970 97 - 1 -GAAAUAACUAUAGCAAAAAUUCAUAAUCGAGCCAAGAGGCGGCGGCGCAAAUGCAAAUGCAAAUGUUAUGCCAGUCCAGACAGUGGCAAAAGUUAUC -...((((((((((((...............(((....))).(((..((....))...)))...))))))((((.(......).))))...)))))). ( -21.70) >DroEre_CAF1 93233 93 - 1 AGAAAUAACUAUAGCAA-AAUUCAUAAUCGAGCCAAGAGGCGG---CGCA-AUGCAAAUGCAAAUGUUUUGCCAGUCCAGACAGUGGCAAAAGUUAUC ....((((((...(((.-....(((...((.(((....)))..---))..-)))....)))......(((((((.(......).))))))))))))). ( -20.30) >DroYak_CAF1 94178 95 - 1 UGAAAUAACUAUGGCAAAAAUUCAUAAUCGAGCCAAGAGGCGG---CGCAAAUGCAAAUGCAAAUGCUACGCCCGUCCAGACAGUGGCAAAAGUUAUC ....((((((((((.......))))).....((((.(.((((.---.(((..(((....)))..)))..)))))((....))..))))....))))). ( -23.80) >consensus _GAAAUAACUAUAGCAAAAAUUCAUAAUCGAGCCAAGAGGCGGCGGCGCAAAUGCAAAUGCAAAUGUUAUGCCAGUCCAGACAGUGGCAAAAGUUAUC ....((((((((((((...............(((....)))......(((........)))...))))))((((.(......).))))...)))))). (-18.04 = -18.16 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:56 2006