Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 18,047,121 – 18,047,238 |
Length | 117 |
Max. P | 0.812447 |
Location | 18,047,121 – 18,047,238 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 96.07 |
Mean single sequence MFE | -25.80 |
Consensus MFE | -23.34 |
Energy contribution | -23.54 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.35 |
Structure conservation index | 0.90 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.812447 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18047121 117 - 27905053 GCUACAGCACAAGAAGGAAAUGCAAAAAAUGACACGAAAUCGUUAAGCGACAACCAGCAGCAACUUCGACUUGAACUCUGCACUCUGCCGCAGAGCUGACACUUGCAACUCCUCCCC ....((((.((((..(((..(((..........(((....)))...((........)).)))..)))..))))...(((((........)))))))))................... ( -25.60) >DroSec_CAF1 89513 111 - 1 G------CACAAGAAGGAAAUGCAAAAAAUGACACGAAAUCGUUAAGCGACAACCAGCAGCAACUUCGACUUGAACUCUGCACUCUGCCGCAGAGCUGACACUUGCAACUCCUCCCC (------((((((..(((..(((..........(((....)))...((........)).)))..)))..))))..((((((........))))))........)))........... ( -24.50) >DroSim_CAF1 91452 117 - 1 GCUACAGCACAAGAAGGAAAUGCAAAAAAUGACACGAAAUCGUUAAGCGACAACCAGCAGCAACUUCGACUUGAACUCUGCACUCUGCCGCAGAGCUGACACUUGCAACUCCUCCCC ....((((.((((..(((..(((..........(((....)))...((........)).)))..)))..))))...(((((........)))))))))................... ( -25.60) >DroEre_CAF1 92707 117 - 1 GGUACAGCACAAGAAGGAAAUGCAAAAAAUGACACGAAAUCGUUAAGCGACAACCAGCAGCAACUUCGACUUGAACUCUGCACUCUGCCGCAGAGCUGACACUUGCAACUCCACCCC .((.((((.((((..(((..(((..........(((....)))...((........)).)))..)))..))))...(((((........)))))))))))................. ( -26.50) >DroYak_CAF1 93668 117 - 1 CGUACAGCACAAGAAGGAAAUGCAAAAAAUGACACGAAAUCGUUAAGCGACAACCAGCAGCAACUUCGACUUGAACUCUGCACUCUGCCGCAGAGCUGACACUUGCAGCACCACCCC .((.((((.((((..(((..(((..........(((....)))...((........)).)))..)))..))))...(((((........)))))))))))................. ( -26.80) >consensus GCUACAGCACAAGAAGGAAAUGCAAAAAAUGACACGAAAUCGUUAAGCGACAACCAGCAGCAACUUCGACUUGAACUCUGCACUCUGCCGCAGAGCUGACACUUGCAACUCCUCCCC ......(((((((..(((..(((..........(((....)))...((........)).)))..)))..))))..((((((........))))))........)))........... (-23.34 = -23.54 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:55 2006