Locus 6824

Sequence ID 3R_DroMel_CAF1
Location 18,040,793 – 18,040,891
Length 98
Max. P 0.915104
window11079

overview

Window 9

Location 18,040,793 – 18,040,891
Length 98
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 74.62
Mean single sequence MFE -25.39
Consensus MFE -12.42
Energy contribution -13.62
Covariance contribution 1.20
Combinations/Pair 1.21
Mean z-score -2.04
Structure conservation index 0.49
SVM decision value 1.10
SVM RNA-class probability 0.915104
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18040793 98 - 27905053
UAGGAUAAGAGUGUGGAAUGAACAAAUUUGCCAAAGGUGCGGAAGUUUUUUUUUUUUGCCAACAAAAUGUAU----UAAGGGACA----------------UUUCCACAUUUAUUUCU
..(((...((((((((((((..(.....(((.....(((((((((.......)))))))..)).....))).----....)..))----------------.))))))))))...))) ( -20.70)
>DroSec_CAF1 83289 96 - 1
UAGGAUAAGAGUGUGGAAUGAACAAAUUUGCCAAAGGUGCGAGAGCUUU----UUUCGGCAACCGAAUAUAUU--CUAAGGGACA----------------UUUCCACAUUUAUUUCU
..(((...((((((((((((.......((((((((((.((....)).))----))).)))))((.........--....))..))----------------.))))))))))...))) ( -26.82)
>DroSim_CAF1 85153 96 - 1
UAGGAUAAGAGUGUGGAAUGAACAAAUUUGCCAAAGGUGCGAAAGCUUU----UUUCGGCAACCGAAUAUAUU--CUAAGGGACA----------------UUUCCACAUUUAUUUCU
..(((...((((((((((((.......((((((((((.((....)).))----))).)))))((.........--....))..))----------------.))))))))))...))) ( -27.82)
>DroEre_CAF1 85380 90 - 1
UAGGAUAAGAUUGUGGAAUGAACAAAUUAGGCCGAUUUC---AAGCCUU----CUUCGGCAACCGAAUAUAUU--UGAGGGGACUG-------------------AACACUAAUUUCC
..(((.....((((.......))))((((((((((....---.......----..)))))............(--(.((....)).-------------------))..))))).))) ( -16.32)
>DroYak_CAF1 87295 111 - 1
UGGGAUAAGAGUGUGGAAUGAACAAAUUUGGACAAUUUG---AAGCUUU----CUUCGGAAACCGAAUAUAUUUUUUAGGGGACUCUGGAAAGGUCUCAGUUUUCCACAUUCAUUUCC
.((((...(((((((((..((((..((((((....((((---(((....----)))))))..))))))...........(((((.((....))))))).)))))))))))))..)))) ( -35.30)
>consensus
UAGGAUAAGAGUGUGGAAUGAACAAAUUUGCCAAAGGUGCG_AAGCUUU____UUUCGGCAACCGAAUAUAUU__CUAAGGGACA________________UUUCCACAUUUAUUUCU
..(((...((((((((((....................((....))........((((.....))))...................................))))))))))...))) (-12.42 = -13.62 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:53 2006