Locus 6816

Sequence ID 3R_DroMel_CAF1
Location 18,029,527 – 18,029,646
Length 119
Max. P 0.883171
window11065

overview

Window 5

Location 18,029,527 – 18,029,646
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 83.88
Mean single sequence MFE -21.82
Consensus MFE -14.14
Energy contribution -14.62
Covariance contribution 0.48
Combinations/Pair 1.21
Mean z-score -2.43
Structure conservation index 0.65
SVM decision value 0.93
SVM RNA-class probability 0.883171
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18029527 119 - 27905053
CUAA-ACACAAUUUGAUUACAGAAUAUUCUCUUUAUUCUGCCUCGCCUUCAUAUAAAUUCCCUGACGAAUUGCAUUCAACUCCACUCAUAUCGAUGGAGUUGAAGAUAAAACGAAACAUA
....-...(((((((....(((((((.......)))))))........(((...........))))))))))..((((((((((.((.....))))))))))))................ ( -24.60)
>DroSec_CAF1 72189 119 - 1
CCAA-ACACAAUUUGAUUACAGAAAAUUCUCUUUAUUCUGCCUCGCGUUCAUAAAAAUUUCCUGAUGAAUUGCAUUCAACUCCACUCAUAUCGAUGGAGUUAAAGAUAAAGCGAAACAUA
....-......((((....))))...(((.(((((((.......((((((((............))))).)))....(((((((.((.....)))))))))...))))))).)))..... ( -20.80)
>DroSim_CAF1 74069 119 - 1
UCAA-ACACAAUUUGAUUACAGAAACUUCUCUUUAUUCUGCCUCGCCUUCAUAUAAAUUCCCUGAUGAAUUGCAUUCAACUCCACUCAUAUCGAUGGAGUUGAAGAUAAAACGAAACAUA
((((-(.....)))))..........(((..((((((.......((.(((((............)))))..)).((((((((((.((.....))))))))))))))))))..)))..... ( -20.90)
>DroEre_CAF1 73962 120 - 1
UUUAGCCCCAAUUUGAUCACACAAAAAUACCUUUUUCCUGCAUCGCCUUUAUAUAAAUUCCCUGCUGAAUUGCAGCAAACUCCACUCAUAUUGAUGGAGUUGAAGAUCAAACGAAACACA
...........(((((((............................................(((((.....)))))(((((((.((.....)))))))))...)))))))......... ( -22.60)
>DroYak_CAF1 75722 120 - 1
CUACACCCCAAUUUGAUUACAGAAAAUUCAGUUUUUUCUGCAUCUCCUUCGUACAAAAUCACUGACGAAAUGCAUCAAACUCUACUCAUAUUGAUGGAGUCGAAGAUCAAACGAAUCACA
...........(((((((.(((((((.......)))))))(..(((((((((.((.......)))))))....(((((............)))))))))..)..)))))))......... ( -20.20)
>consensus
CUAA_ACACAAUUUGAUUACAGAAAAUUCUCUUUAUUCUGCCUCGCCUUCAUAUAAAUUCCCUGAUGAAUUGCAUUCAACUCCACUCAUAUCGAUGGAGUUGAAGAUAAAACGAAACAUA
...........((((....(((((((.......)))))))......(((((............((((.....))))..((((((.((.....)))))))))))))......))))..... (-14.14 = -14.62 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:39 2006