Locus 6815

Sequence ID 3R_DroMel_CAF1
Location 18,028,102 – 18,028,200
Length 98
Max. P 0.988729
window11064

overview

Window 4

Location 18,028,102 – 18,028,200
Length 98
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 91.25
Mean single sequence MFE -43.62
Consensus MFE -40.79
Energy contribution -39.98
Covariance contribution -0.81
Combinations/Pair 1.19
Mean z-score -2.32
Structure conservation index 0.93
SVM decision value 2.13
SVM RNA-class probability 0.988729
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18028102 98 - 27905053
GGCCUGCACACGAGGCUACCGUUUCUGUUUCUGUGGCUUUG------GCAUCGCCCGAGUGGCUAAAAUGGCCAUGGCCGGGCGGUGCAGAGUGGUUCGAUGGU
(..(..(...(((((((((.(.........).)))))))))------((((((((((.((((((.....))))))...))))))))))...)..)..)...... ( -45.30)
>DroSec_CAF1 70691 98 - 1
GGCCAGCACACGAGGCUACCGUUUCUGUUUCUGUGGCUUUG------GCAUCGCCCGAGUGUCUAAAAUGGACACGGCCGGGUGGUGCAGAGUGGUUCGAUGGU
.((((.(((.(((((((((.(.........).)))))))))------((((((((((.((((((.....))))))...))))))))))...)))......)))) ( -43.00)
>DroSim_CAF1 72582 98 - 1
GGCCAGCACACGAGGCUACCGUUUCUGUUUCUGUGGCUUUG------GCAUCGCCCGAGUGGCUAAAAUGGCCACGGCCGGGUGGUGCAGAGUGGUUCGAUGGU
.((((.(((.(((((((((.(.........).)))))))))------((((((((((.((((((.....))))))...))))))))))...)))......)))) ( -45.10)
>DroEre_CAF1 72449 104 - 1
GGCCUGCACACGGGGCUCCCGUUUCUGUUUCUGUGGCUUUGGCUCUGGCAUCGCCGGAGUGGCUAAAAUGGCUAUGGCCUGGUGGUGCAGAGUGGUUCGAUGUU
.((((((((((.(((((.((((((..((..((.((((....((....))...)))).))..))..))))))....))))).)).)))))).))........... ( -41.10)
>consensus
GGCCAGCACACGAGGCUACCGUUUCUGUUUCUGUGGCUUUG______GCAUCGCCCGAGUGGCUAAAAUGGCCACGGCCGGGUGGUGCAGAGUGGUUCGAUGGU
(..((((...(((((((((.(.........).)))))))))......((((((((((.((((((.....))))))...))))))))))...))))..)...... (-40.79 = -39.98 +  -0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:38 2006