| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 18,027,970 – 18,028,067 |
| Length | 97 |
| Max. P | 0.844755 |
| Location | 18,027,970 – 18,028,067 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 92.53 |
| Mean single sequence MFE | -30.28 |
| Consensus MFE | -27.53 |
| Energy contribution | -27.62 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.844755 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 18027970 97 + 27905053 GA-ACAAAAAAUCGAAUUUCCCGUGCGGACUGAUUCGAUUUGGCGUUGCAAUUUCACGCUGUGUUAUUGCAAAGUGGCUGCAACUGUC--GGCGCCAGGC ..-.....((((((((((..((....))...))))))))))(((.(((((((..(((...)))..)))))))....(((((....).)--)))))).... ( -30.80) >DroPse_CAF1 89338 94 + 1 GA-ACAAAAAAUCGAAUUUCCCGUGCGGACUGAUUCGAUUUGGCGUUGCAAUUUCACGCUGUGUUAUUGCAAAGUGGCUGCAACUGUC--GGCGCCA--- ..-.....((((((((((..((....))...))))))))))(((.(((((((..(((...)))..)))))))....(((((....).)--)))))).--- ( -30.80) >DroGri_CAF1 79058 97 + 1 -AAAAGAAGAAUCGAAUUUCCCGUGCGGACUGAUUCGAUUUGCCGUUGCAAUUUCACGCUGUGUUAUUGCAAAGUGGCUGCAACUGCCCCAGAACUCG-- -....((.((((((((((..((....))...))))))))))((.((((((...((((..(((......)))..)))).)))))).))........)).-- ( -27.00) >DroEre_CAF1 72301 97 + 1 GA-GCAAAAAAUCGAAUUUCCCGUGCGGACUGAUUCGAUUUGGCGUUGCAAUUUCACGCUGUGUUAUUGCAAAGUGGCUGCAACUGUC--GGCGCCAGGC ..-((...((((((((((..((....))...))))))))))(((.(((((((..(((...)))..)))))))....(((((....).)--))))))..)) ( -31.50) >DroWil_CAF1 76339 98 + 1 GAGGAGAAAAAUCGAAUUUCCCGUGCGGACUGAUUCGAUUUGGCGUUGCAAUUUCACGCUGUGUUAUUGCAAAGUGGCUGCAACUGUC--GGCGCCAGGC ........((((((((((..((....))...))))))))))(((.(((((((..(((...)))..)))))))....(((((....).)--)))))).... ( -30.80) >DroAna_CAF1 67442 97 + 1 GA-AAAAAAAAUCGAAUUUCCCGUGCGGACUGAUUCGAUUUGGCGUUGCAAUUUCACGCUGUGUUAUUGCAAAGUGGCUGCAACUGUC--GGCGCCAGGC ..-.....((((((((((..((....))...))))))))))(((.(((((((..(((...)))..)))))))....(((((....).)--)))))).... ( -30.80) >consensus GA_AAAAAAAAUCGAAUUUCCCGUGCGGACUGAUUCGAUUUGGCGUUGCAAUUUCACGCUGUGUUAUUGCAAAGUGGCUGCAACUGUC__GGCGCCAGGC ........((((((((((..((....))...))))))))))(((((((((...((((..(((......)))..)))).)))))).((....))))).... (-27.53 = -27.62 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:37 2006