Locus 6813

Sequence ID 3R_DroMel_CAF1
Location 18,027,055 – 18,027,157
Length 102
Max. P 0.986064
window11062

overview

Window 2

Location 18,027,055 – 18,027,157
Length 102
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 87.04
Mean single sequence MFE -15.64
Consensus MFE -15.12
Energy contribution -15.16
Covariance contribution 0.04
Combinations/Pair 1.06
Mean z-score -1.88
Structure conservation index 0.97
SVM decision value 2.03
SVM RNA-class probability 0.986064
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 18027055 102 + 27905053
GCCAAAAUGCCGGCAAACGGCGAAUUUCCAAUCCGAAAUUUUAUAGUUUGUAUAGAACAAUGCCACUUUUCGCCACACUCACACACCC--ACCCACUCACACAU
(((........)))....((((((((((......)))).......((((.....))))..........))))))..............--.............. ( -16.00)
>DroSec_CAF1 69655 89 + 1
GCCAA-ACGCCGGCAAACGGCGAAUUUCCAAUCCGAAAUUUUAUAGUUUGAAUAGAACAAUGCCACAUUUCGCCACACUCACACA--------------CACAU
(((..-.....)))....((((((((((......)))).......((((.....))))..........))))))...........--------------..... ( -15.70)
>DroSim_CAF1 71547 95 + 1
GCCAA-ACGCCGGCAAACGGCGAAUUUCCAAUCCGAAAUUUUAUAGUUUGAAUAGAACAAUGCCACAUUUCGCCACACUCACACA--------CACUCACACAU
(((..-.....)))....((((((((((......)))).......((((.....))))..........))))))...........--------........... ( -15.70)
>DroEre_CAF1 71404 92 + 1
GCCAA-ACGCCGGCUAACGGCGAGUUUCCAAUCCCAAAUUUUAUAGUUUGAAUAGAACAAUGCCACAU-UCGCCACACUCACAUAC----------ACACACAC
(((..-.....)))....(((((((.........((((((....))))))....(........)..))-)))))............----------........ ( -14.60)
>DroYak_CAF1 73028 103 + 1
GCCAA-ACGCCGGCAAACGGCGAAUUUCCAAUCCGAAAUUUUAUAGUUUGAAUAGAACAAUGCCACAUUUCGCCAUACUCAAACACCCAUACCCAUACACACAC
.....-.(((((.....)))))((((((......)))))).....((((((.((....((((...))))......)).)))))).................... ( -16.20)
>consensus
GCCAA_ACGCCGGCAAACGGCGAAUUUCCAAUCCGAAAUUUUAUAGUUUGAAUAGAACAAUGCCACAUUUCGCCACACUCACACAC_______CA_ACACACAU
(((........)))....((((((((((......)))))......((((.....))))...........))))).............................. (-15.12 = -15.16 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:36 2006